Gene annotation
Transcriptome id Sobic.002G050400.1
Synonym Sb02g004220
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
UniProt C5XAF8
Pfam PF14368
Panther DB PTHR33044 PTHR33044:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22600 : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
RAP-DB (Rice) LOC_Os07g07930.1 : LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MaizeGDB (Corn) Zm00025a016088
Brachypodium PNT77989
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G050400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G006200 auxin-induced protein 5NG4, putative, expressed -
2 Sobic.003G057600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G057366 - K11254: histone H4
4 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
5 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
6 Sobic.009G015000 expressed protein -
7 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
8 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G322532 - K02975: RP-S25e, small subunit ribosomal protein S25e
10 Sobic.001G161601 - K14484: auxin-responsive protein IAA
11 Sobic.002G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
12 Sobic.001G425300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.007G172300 fiber protein Fb14, putative, expressed K03938: NADH dehydrogenase (ubiquinone) Fe-S protein 5
14 Sobic.001G112100 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
15 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
16 Sobic.002G318501 - -
17 Sobic.001G009700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
18 Sobic.004G128000 expressed protein -
19 Sobic.002G350700 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
20 Sobic.001G059700 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic002G050400 Sobic002G050400 Sobic009G006200 Sobic009G006200 Sobic002G050400--Sobic009G006200 Sobic003G057600 Sobic003G057600 Sobic002G050400--Sobic003G057600 Sobic003G057366 Sobic003G057366 Sobic002G050400--Sobic003G057366 Sobic004G099500 Sobic004G099500 Sobic002G050400--Sobic004G099500 Sobic010G057100 Sobic010G057100 Sobic002G050400--Sobic010G057100 Sobic009G015000 Sobic009G015000 Sobic002G050400--Sobic009G015000 Sobic002G276000 Sobic002G276000 Sobic002G050400--Sobic002G276000 Sobic007G168400 Sobic007G168400 Sobic002G050400--Sobic007G168400 Sobic003G322532 Sobic003G322532 Sobic002G050400--Sobic003G322532 Sobic001G112100 Sobic001G112100 Sobic009G006200--Sobic001G112100 Sobic008G009400 Sobic008G009400 Sobic009G006200--Sobic008G009400 Sobic004G297900 Sobic004G297900 Sobic009G006200--Sobic004G297900 Sobic009G006200--Sobic002G050400 Sobic006G235200 Sobic006G235200 Sobic009G006200--Sobic006G235200 Sobic004G295100 Sobic004G295100 Sobic009G006200--Sobic004G295100 Sobic002G351300 Sobic002G351300 Sobic009G006200--Sobic002G351300 Sobic003G299300 Sobic003G299300 Sobic009G006200--Sobic003G299300 SobicK026900 SobicK026900 Sobic009G006200--SobicK026900 Sobic009G008300 Sobic009G008300 Sobic003G057600--Sobic009G008300 Sobic003G360600 Sobic003G360600 Sobic003G057600--Sobic003G360600 Sobic001G161601 Sobic001G161601 Sobic003G057600--Sobic001G161601 Sobic003G057600--Sobic002G050400 Sobic001G395800 Sobic001G395800 Sobic003G057600--Sobic001G395800 Sobic001G161500 Sobic001G161500 Sobic003G057600--Sobic001G161500 Sobic003G057600--Sobic001G112100 Sobic006G172550 Sobic006G172550 Sobic003G057600--Sobic006G172550 Sobic003G399600 Sobic003G399600 Sobic003G057600--Sobic003G399600 Sobic009G167500 Sobic009G167500 Sobic003G057366--Sobic009G167500 Sobic003G057366--Sobic010G057100 Sobic003G057366--Sobic004G099500 Sobic001G416900 Sobic001G416900 Sobic003G057366--Sobic001G416900 Sobic003G057366--Sobic009G015000 Sobic001G416800 Sobic001G416800 Sobic003G057366--Sobic001G416800 Sobic007G172300 Sobic007G172300 Sobic003G057366--Sobic007G172300 Sobic003G057366--Sobic002G050400 Sobic001G009700 Sobic001G009700 Sobic003G057366--Sobic001G009700 Sobic004G099500--Sobic010G057100 Sobic004G335600 Sobic004G335600 Sobic004G099500--Sobic004G335600 Sobic004G099500--Sobic009G015000 Sobic003G338966 Sobic003G338966 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic007G045700 Sobic007G045700 Sobic004G099500--Sobic007G045700 Sobic004G099500--Sobic003G057366 Sobic004G271400 Sobic004G271400 Sobic004G099500--Sobic004G271400 Sobic004G099500--Sobic003G322532 Sobic010G057100--Sobic004G099500 Sobic010G057100--Sobic009G015000 Sobic010G057100--Sobic004G335600 Sobic010G057100--Sobic003G057366 Sobic010G057100--Sobic003G322532 Sobic004G128000 Sobic004G128000 Sobic010G057100--Sobic004G128000 Sobic009G177700 Sobic009G177700 Sobic010G057100--Sobic009G177700 Sobic010G057100--Sobic007G045700 Sobic001G313200 Sobic001G313200 Sobic010G057100--Sobic001G313200 Sobic009G015000--Sobic010G057100 Sobic009G015000--Sobic004G099500 Sobic009G015000--Sobic004G128000 Sobic009G015000--Sobic007G172300 Sobic009G015000--Sobic004G335600 Sobic009G015000--Sobic003G322532 Sobic002G253000 Sobic002G253000 Sobic009G015000--Sobic002G253000 Sobic009G015000--Sobic003G057366 Sobic003G395500 Sobic003G395500 Sobic009G015000--Sobic003G395500 Sobic003G057100 Sobic003G057100 Sobic002G276000--Sobic003G057100 Sobic001G054800 Sobic001G054800 Sobic002G276000--Sobic001G054800 Sobic003G347900 Sobic003G347900 Sobic002G276000--Sobic003G347900 Sobic001G529400 Sobic001G529400 Sobic002G276000--Sobic001G529400 Sobic002G276000--Sobic001G009700 Sobic002G291066 Sobic002G291066 Sobic002G276000--Sobic002G291066 Sobic007G198000 Sobic007G198000 Sobic002G276000--Sobic007G198000 Sobic010G047200 Sobic010G047200 Sobic002G276000--Sobic010G047200 Sobic009G015900 Sobic009G015900 Sobic002G276000--Sobic009G015900 Sobic004G259700 Sobic004G259700 Sobic007G168400--Sobic004G259700 Sobic010G013100 Sobic010G013100 Sobic007G168400--Sobic010G013100 Sobic007G168400--Sobic001G416900 Sobic007G168400--Sobic004G099500 Sobic007G168400--Sobic009G167500 Sobic007G168400--Sobic002G276000 Sobic007G168400--Sobic003G057600 Sobic007G168400--Sobic001G054800 Sobic007G168400--Sobic001G009700 Sobic002G414700 Sobic002G414700 Sobic003G322532--Sobic002G414700 Sobic001G295200 Sobic001G295200 Sobic003G322532--Sobic001G295200 Sobic007G211700 Sobic007G211700 Sobic003G322532--Sobic007G211700 Sobic005G107900 Sobic005G107900 Sobic003G322532--Sobic005G107900 Sobic001G367600 Sobic001G367600 Sobic003G322532--Sobic001G367600 Sobic003G152600 Sobic003G152600 Sobic003G322532--Sobic003G152600 Sobic003G043600 Sobic003G043600 Sobic003G322532--Sobic003G043600 Sobic009G111000 Sobic009G111000 Sobic003G322532--Sobic009G111000 Sobic001G493001 Sobic001G493001 Sobic003G322532--Sobic001G493001
Octagon: transcription factors


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