Gene annotation
Transcriptome id Sobic.004G172600.1
Synonym Sb04g022340
Functional annotation tetratricopeptide repeat containing protein, putative, expressed
UniProt A0A194YRB2
Pfam PF13414
Panther DB PTHR21581 PTHR21581:SF6
NCBI CDD KOG2796; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39820 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g34540.1 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020611
Brachypodium KQJ99843
Barley HORVU6Hr1G059720.5 , HORVU6Hr1G059720.3 , HORVU6Hr1G059720.2 , HORVU6Hr1G059720.1 , HORVU6Hr1G059720.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G054100 expressed protein -
2 Sobic.009G228300 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
3 Sobic.005G034600 expressed protein -
4 Sobic.001G072900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.009G243900 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K01247: DNA-3-methyladenine glycosylase II
6 Sobic.001G171500 presenilin, putative, expressed K04505: PSEN1, presenilin 1
7 Sobic.001G487000 expressed protein -
8 Sobic.001G513100 LYR motif containing protein, putative, expressed -
9 Sobic.001G150800 expressed protein -
10 Sobic.010G097400 thiol-disulphide oxidoreductase DCC, putative, expressed -
11 Sobic.001G282200 ribosomal protein L35, putative, expressed -
12 Sobic.006G062500 calreticulin precursor protein, putative, expressed K08054: calnexin
13 Sobic.009G235300 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K01247: DNA-3-methyladenine glycosylase II
14 Sobic.003G008300 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
15 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.002G228600 gibberellin receptor GID1L2, putative, expressed -
17 Sobic.007G164300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@rotamase("PubMedID : 26759170,PubMedID : 24597475")@peptidyl-prolyl cis-trans isomerase, putative, expressed -
18 Sobic.009G068000 late embryogenesis abundant protein, putative, expressed -
19 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma
20 Sobic.006G077600 phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed K03861: PIGP, GPI19, phosphatidylinositol N-acetylglucosaminyltransferase subunit P


Gene co-expression network
sample Sobic004G172600 Sobic004G172600 Sobic003G054100 Sobic003G054100 Sobic004G172600--Sobic003G054100 Sobic009G228300 Sobic009G228300 Sobic004G172600--Sobic009G228300 Sobic005G034600 Sobic005G034600 Sobic004G172600--Sobic005G034600 Sobic001G072900 Sobic001G072900 Sobic004G172600--Sobic001G072900 Sobic009G243900 Sobic009G243900 Sobic004G172600--Sobic009G243900 Sobic001G171500 Sobic001G171500 Sobic004G172600--Sobic001G171500 Sobic001G487000 Sobic001G487000 Sobic004G172600--Sobic001G487000 Sobic001G513100 Sobic001G513100 Sobic004G172600--Sobic001G513100 Sobic001G150800 Sobic001G150800 Sobic004G172600--Sobic001G150800 Sobic003G054100--Sobic004G172600 Sobic003G054100--Sobic001G487000 Sobic003G049800 Sobic003G049800 Sobic003G054100--Sobic003G049800 Sobic010G231700 Sobic010G231700 Sobic003G054100--Sobic010G231700 Sobic006G255800 Sobic006G255800 Sobic003G054100--Sobic006G255800 Sobic003G395500 Sobic003G395500 Sobic003G054100--Sobic003G395500 Sobic003G054100--Sobic001G072900 Sobic003G054100--Sobic009G228300 Sobic003G095200 Sobic003G095200 Sobic003G054100--Sobic003G095200 Sobic009G228300--Sobic001G072900 Sobic009G228300--Sobic004G172600 Sobic009G228300--Sobic005G034600 Sobic009G228300--Sobic003G054100 Sobic001G267500 Sobic001G267500 Sobic009G228300--Sobic001G267500 Sobic001G312700 Sobic001G312700 Sobic009G228300--Sobic001G312700 Sobic010G018900 Sobic010G018900 Sobic009G228300--Sobic010G018900 Sobic007G130000 Sobic007G130000 Sobic009G228300--Sobic007G130000 Sobic004G076850 Sobic004G076850 Sobic009G228300--Sobic004G076850 Sobic007G164300 Sobic007G164300 Sobic005G034600--Sobic007G164300 Sobic002G219800 Sobic002G219800 Sobic005G034600--Sobic002G219800 Sobic005G034600--Sobic009G228300 Sobic005G034600--Sobic001G072900 Sobic004G043600 Sobic004G043600 Sobic005G034600--Sobic004G043600 Sobic005G034600--Sobic004G172600 Sobic002G332100 Sobic002G332100 Sobic005G034600--Sobic002G332100 Sobic001G436100 Sobic001G436100 Sobic005G034600--Sobic001G436100 Sobic010G277000 Sobic010G277000 Sobic005G034600--Sobic010G277000 Sobic001G072900--Sobic001G267500 Sobic001G072900--Sobic001G487000 Sobic006G077600 Sobic006G077600 Sobic001G072900--Sobic006G077600 Sobic002G363700 Sobic002G363700 Sobic001G072900--Sobic002G363700 Sobic003G377200 Sobic003G377200 Sobic001G072900--Sobic003G377200 Sobic001G541601 Sobic001G541601 Sobic001G072900--Sobic001G541601 Sobic007G208500 Sobic007G208500 Sobic001G072900--Sobic007G208500 Sobic006G278900 Sobic006G278900 Sobic001G072900--Sobic006G278900 Sobic001G072900--Sobic009G228300 Sobic003G274200 Sobic003G274200 Sobic009G243900--Sobic003G274200 Sobic003G167000 Sobic003G167000 Sobic009G243900--Sobic003G167000 Sobic006G153200 Sobic006G153200 Sobic009G243900--Sobic006G153200 Sobic002G217500 Sobic002G217500 Sobic009G243900--Sobic002G217500 Sobic003G260600 Sobic003G260600 Sobic009G243900--Sobic003G260600 Sobic008G132200 Sobic008G132200 Sobic009G243900--Sobic008G132200 Sobic001G543400 Sobic001G543400 Sobic009G243900--Sobic001G543400 Sobic009G243900--Sobic004G172600 Sobic002G420600 Sobic002G420600 Sobic009G243900--Sobic002G420600 Sobic004G018200 Sobic004G018200 Sobic001G171500--Sobic004G018200 Sobic002G372700 Sobic002G372700 Sobic001G171500--Sobic002G372700 Sobic004G210101 Sobic004G210101 Sobic001G171500--Sobic004G210101 Sobic002G427700 Sobic002G427700 Sobic001G171500--Sobic002G427700 Sobic004G339600 Sobic004G339600 Sobic001G171500--Sobic004G339600 Sobic007G019501 Sobic007G019501 Sobic001G171500--Sobic007G019501 Sobic001G171500--Sobic004G172600 Sobic009G077700 Sobic009G077700 Sobic001G171500--Sobic009G077700 Sobic002G259400 Sobic002G259400 Sobic001G171500--Sobic002G259400 Sobic001G487000--Sobic002G363700 Sobic001G487000--Sobic001G541601 Sobic001G487000--Sobic006G278900 Sobic001G487000--Sobic001G072900 Sobic001G487000--Sobic006G077600 Sobic001G487000--Sobic007G208500 Sobic010G096500 Sobic010G096500 Sobic001G487000--Sobic010G096500 Sobic001G487000--Sobic003G054100 Sobic010G196300 Sobic010G196300 Sobic001G487000--Sobic010G196300 Sobic002G366700 Sobic002G366700 Sobic001G513100--Sobic002G366700 Sobic003G008300 Sobic003G008300 Sobic001G513100--Sobic003G008300 Sobic002G058600 Sobic002G058600 Sobic001G513100--Sobic002G058600 Sobic002G339400 Sobic002G339400 Sobic001G513100--Sobic002G339400 Sobic001G494150 Sobic001G494150 Sobic001G513100--Sobic001G494150 Sobic010G087200 Sobic010G087200 Sobic001G513100--Sobic010G087200 Sobic001G428700 Sobic001G428700 Sobic001G513100--Sobic001G428700 Sobic003G118900 Sobic003G118900 Sobic001G513100--Sobic003G118900 Sobic004G180600 Sobic004G180600 Sobic001G513100--Sobic004G180600 Sobic009G050100 Sobic009G050100 Sobic001G150800--Sobic009G050100 Sobic004G109500 Sobic004G109500 Sobic001G150800--Sobic004G109500 Sobic010G097400 Sobic010G097400 Sobic001G150800--Sobic010G097400 Sobic001G157500 Sobic001G157500 Sobic001G150800--Sobic001G157500 Sobic003G284500 Sobic003G284500 Sobic001G150800--Sobic003G284500 Sobic001G150800--Sobic003G377200 Sobic001G150800--Sobic004G180600 Sobic004G043200 Sobic004G043200 Sobic001G150800--Sobic004G043200 Sobic001G150800--Sobic006G255800
Octagon: transcription factors


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