Gene annotation
| Transcriptome id | Sobic.006G062500.4,Sobic.006G062500.1,Sobic.006G062500.2,Sobic.006G062500.5,Sobic.006G062500.3 |
|---|---|
| Synonym | ATCNX1, CNX1, Sb06g015020 |
| Functional annotation | calreticulin precursor protein, putative, expressed |
| UniProt | A0A1B6PKJ5 , A0A1B6PKJ7 , A0A1B6PKJ9 , A0A1B6PKJ4 , A0A1B6PKJ2 |
| Pfam | PF00262 |
| Panther DB | PTHR11073 PTHR11073:SF1 |
| NCBI CDD | KOG0675; Calnexin |
| KEGG Orthology | K08054; calnexin |
| Gene Ontology | GO:0006457; protein folding GO:0005783endoplasmic reticulum GO:0005509calcium ion binding |
Orthologs (automatic annotation)
| TAIR | AT5G61790 : calnexin 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g32950.2,LOC_Os04g32950.1 : calreticulin precursor protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a046150 , Zm00025a012063 , Zm00025a011619 , Zm00025a055969 |
| Brachypodium | KQK02438 , KQK02439 |
| Barley | HORVU6Hr1G018370.3 , HORVU6Hr1G018370.2 , HORVU6Hr1G018370.1 , HORVU6Hr1G018370.7 , HORVU6Hr1G018370.5 , HORVU6Hr1G018370.4 , HORVU6Hr1G018370.9 , HORVU6Hr1G018370.8 , HORVU6Hr1G018420.2 , HORVU6Hr1G018420.7 , HORVU6Hr1G018420.6 , HORVU6Hr1G018420.4 , HORVU6Hr1G018420.3 , HORVU6Hr1G018420.1 |
| Wheat | TraesCS6B02G130100 , TraesCS6D02G090400 , TraesCS6A02G101800 , TraesCS6D02G090200 , TraesCS6A02G101900 , TraesCS6B02G129800 , TraesCS2A02G403900 |
| Populus | PNT10592 , PNT10589 , PNT01577 , PNT01576 , PNT10591 , PNT10590 |
JBrowse
| Sobic.006G062500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.K043400 | dnaJ homolog subfamily C member, putative, expressed | K09523: DnaJ homolog subfamily C member 3 |
| 2 | Sobic.001G161700 | vesicle-fusing ATPase, putative, expressed | K06027: NSF, vesicle-fusing ATPase |
| 3 | Sobic.006G012700 | expressed protein | - |
| 4 | Sobic.008G151500 | EXS family protein, putative, expressed | - |
| 5 | Sobic.001G490500 | conserved oligomeric Golgi complex component 4, related, putative, expressed | - |
| 6 | Sobic.001G387800 | outer mitochondrial membrane porin, putative, expressed | K11518: mitochondrial import receptor subunit TOM40 |
| 7 | Sobic.007G003100 | transmembrane protein 18, putative, expressed | - |
| 8 | Sobic.002G070300 | expressed protein | - |
| 9 | Sobic.001G443200 | transmembrane 9 superfamily member, putative, expressed | K17087: transmembrane 9 superfamily member 3 |
| 10 | Sobic.001G047600 | 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed | K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) |
| 11 | Sobic.001G378200 | tetratricopeptide repeat domain containing protein, expressed | - |
| 12 | Sobic.002G309500 | ras-related protein, putative, expressed | K07893: Ras-related protein Rab-6A |
| 13 | Sobic.004G039400 | Constitutively expressed genes(PubMedID : 24456189)@- | K03257: translation initiation factor 4A |
| 14 | Sobic.003G034900 | mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed | K01412: PMPCA, mitochondrial-processing peptidase subunit alpha |
| 15 | Sobic.003G156400 | OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed | K09584: PDIA6, protein disulfide-isomerase A6 |
| 16 | Sobic.009G224400 | ATP synthase, putative, expressed | K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta |
| 17 | Sobic.001G458800 | mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed | K17732: PMPCB, mitochondrial-processing peptidase subunit beta |
| 18 | Sobic.002G367800 | PPR repeat domain containing protein, putative, expressed | - |
| 19 | Sobic.007G119600 | clathrin adaptor complex small chain domain containing protein, expressed | K12403: AP-4 complex subunit sigma-1 |
| 20 | Sobic.002G186300 | serine/threonine-protein kinase 16, putative, expressed | K08856: serine/threonine kinase 16 |
Gene co-expression network
Octagon: transcription factors
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