Gene annotation
Transcriptome id Sobic.002G367800.1
Synonym Sb02g038690
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XDV4
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF822
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G60960 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g41260.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015171
Brachypodium KQK15345
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G367800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
3 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
4 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
6 Sobic.004G356300 expressed protein -
7 Sobic.001G214900 expressed protein -
8 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
9 Sobic.002G070300 expressed protein -
10 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
11 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
12 Sobic.004G007700 pentatricopeptide, putative, expressed -
13 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
14 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
15 Sobic.005G129201 - -
16 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
17 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
18 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
19 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
20 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7


Gene co-expression network
sample Sobic002G367800 Sobic002G367800 Sobic004G212100 Sobic004G212100 Sobic002G367800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic002G367800--Sobic001G011000 Sobic003G388900 Sobic003G388900 Sobic002G367800--Sobic003G388900 Sobic009G041800 Sobic009G041800 Sobic002G367800--Sobic009G041800 Sobic001G522000 Sobic001G522000 Sobic002G367800--Sobic001G522000 Sobic004G356300 Sobic004G356300 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G071100 Sobic002G071100 Sobic002G367800--Sobic002G071100 Sobic002G070300 Sobic002G070300 Sobic002G367800--Sobic002G070300 Sobic004G212100--Sobic002G367800 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic004G212100--Sobic003G388900 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic001G011000--Sobic002G071100 Sobic001G011000--Sobic004G356300 Sobic001G011000--Sobic002G070300 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic003G388900--Sobic002G367800 Sobic002G402500 Sobic002G402500 Sobic003G388900--Sobic002G402500 Sobic003G388900--Sobic001G522000 Sobic003G202100 Sobic003G202100 Sobic003G388900--Sobic003G202100 Sobic003G388900--Sobic004G212100 Sobic001G304000 Sobic001G304000 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic001G413100 Sobic001G413100 Sobic003G388900--Sobic001G413100 Sobic003G205400 Sobic003G205400 Sobic003G388900--Sobic003G205400 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic009G041800--Sobic004G212100 Sobic009G041800--Sobic001G011000 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic010G134100 Sobic010G134100 Sobic009G041800--Sobic010G134100 Sobic001G522000--Sobic002G367800 Sobic002G423500 Sobic002G423500 Sobic001G522000--Sobic002G423500 Sobic001G522000--Sobic001G490500 Sobic006G041100 Sobic006G041100 Sobic001G522000--Sobic006G041100 Sobic001G522000--Sobic003G388900 Sobic001G522000--Sobic003G205400 Sobic001G522000--Sobic002G402500 Sobic006G265600 Sobic006G265600 Sobic001G522000--Sobic006G265600 Sobic001G117800 Sobic001G117800 Sobic001G522000--Sobic001G117800 Sobic004G007700 Sobic004G007700 Sobic004G356300--Sobic004G007700 Sobic004G356300--Sobic001G011000 Sobic003G075200 Sobic003G075200 Sobic004G356300--Sobic003G075200 Sobic004G356300--Sobic002G367800 Sobic002G090500 Sobic002G090500 Sobic004G356300--Sobic002G090500 Sobic004G356300--Sobic008G057900 Sobic001G176900 Sobic001G176900 Sobic004G356300--Sobic001G176900 Sobic004G356300--Sobic010G134100 Sobic004G356300--Sobic002G071100 Sobic001G060300 Sobic001G060300 Sobic001G214900--Sobic001G060300 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic001G214900--Sobic003G205400 Sobic001G214900--Sobic010G134100 Sobic010G277000 Sobic010G277000 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic002G071100--Sobic001G011000 Sobic001G380600 Sobic001G380600 Sobic002G071100--Sobic001G380600 Sobic002G071100--Sobic002G367800 Sobic002G071100--Sobic003G202100 Sobic002G071100--Sobic001G304000 Sobic002G071100--Sobic004G356300 Sobic002G071100--Sobic004G212100 Sobic002G071100--Sobic009G041800 Sobic002G071100--Sobic003G388900 Sobic008G132200 Sobic008G132200 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic001G543400 Sobic001G543400 Sobic002G070300--Sobic001G543400 Sobic003G260600 Sobic003G260600 Sobic002G070300--Sobic003G260600 Sobic002G070300--Sobic001G011000 Sobic003G159700 Sobic003G159700 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic001G378800 Sobic001G378800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000
Octagon: transcription factors


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