Gene annotation
Transcriptome id Sobic.004G007700.1
Synonym Sb04g000850
Functional annotation pentatricopeptide, putative, expressed
UniProt C5XS65
Pfam PF01535 PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF368
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37230 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g02020.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a018667
Brachypodium KQJ92852
Barley HORVU6Hr1G005240.1 , HORVU6Hr1G005240.3 , HORVU6Hr1G005240.2 , HORVU6Hr1G005240.4
Wheat TraesCS2B02G602200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356300 expressed protein -
2 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
4 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
5 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
6 Sobic.010G080900 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
7 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
8 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
9 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
10 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
11 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
12 Sobic.002G192900 expressed protein -
13 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
14 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
15 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
16 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
17 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
18 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
19 Sobic.002G426100 aldehyde dehydrogenase, putative, expressed -
20 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -


Gene co-expression network
sample Sobic004G007700 Sobic004G007700 Sobic004G356300 Sobic004G356300 Sobic004G007700--Sobic004G356300 Sobic010G018900 Sobic010G018900 Sobic004G007700--Sobic010G018900 Sobic001G011000 Sobic001G011000 Sobic004G007700--Sobic001G011000 Sobic003G075200 Sobic003G075200 Sobic004G007700--Sobic003G075200 Sobic002G367800 Sobic002G367800 Sobic004G007700--Sobic002G367800 Sobic010G080900 Sobic010G080900 Sobic004G007700--Sobic010G080900 Sobic010G002800 Sobic010G002800 Sobic004G007700--Sobic010G002800 Sobic007G140100 Sobic007G140100 Sobic004G007700--Sobic007G140100 Sobic001G167500 Sobic001G167500 Sobic004G007700--Sobic001G167500 Sobic004G356300--Sobic004G007700 Sobic004G356300--Sobic001G011000 Sobic004G356300--Sobic003G075200 Sobic004G356300--Sobic002G367800 Sobic002G090500 Sobic002G090500 Sobic004G356300--Sobic002G090500 Sobic008G057900 Sobic008G057900 Sobic004G356300--Sobic008G057900 Sobic001G176900 Sobic001G176900 Sobic004G356300--Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic004G356300--Sobic010G134100 Sobic002G071100 Sobic002G071100 Sobic004G356300--Sobic002G071100 Sobic002G308000 Sobic002G308000 Sobic010G018900--Sobic002G308000 Sobic010G257500 Sobic010G257500 Sobic010G018900--Sobic010G257500 Sobic010G018900--Sobic004G007700 Sobic002G066800 Sobic002G066800 Sobic010G018900--Sobic002G066800 Sobic010G038900 Sobic010G038900 Sobic010G018900--Sobic010G038900 Sobic002G271400 Sobic002G271400 Sobic010G018900--Sobic002G271400 Sobic010G269800 Sobic010G269800 Sobic010G018900--Sobic010G269800 Sobic009G063800 Sobic009G063800 Sobic010G018900--Sobic009G063800 Sobic006G272300 Sobic006G272300 Sobic010G018900--Sobic006G272300 Sobic004G212100 Sobic004G212100 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic001G011000--Sobic002G071100 Sobic001G011000--Sobic004G356300 Sobic002G070300 Sobic002G070300 Sobic001G011000--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic001G011000--Sobic008G057900 Sobic003G075200--Sobic004G356300 Sobic001G352800 Sobic001G352800 Sobic003G075200--Sobic001G352800 Sobic003G075200--Sobic008G057900 Sobic010G188900 Sobic010G188900 Sobic003G075200--Sobic010G188900 Sobic009G220000 Sobic009G220000 Sobic003G075200--Sobic009G220000 Sobic003G075200--Sobic002G153000 Sobic003G075200--Sobic002G090500 Sobic003G075200--Sobic004G007700 Sobic006G153200 Sobic006G153200 Sobic003G075200--Sobic006G153200 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic003G388900 Sobic003G388900 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic001G522000 Sobic001G522000 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G367800--Sobic002G070300 Sobic010G080900--Sobic002G308000 Sobic010G080900--Sobic010G188900 Sobic010G080900--Sobic007G140100 Sobic008G132200 Sobic008G132200 Sobic010G080900--Sobic008G132200 Sobic007G048700 Sobic007G048700 Sobic010G080900--Sobic007G048700 Sobic002G268700 Sobic002G268700 Sobic010G080900--Sobic002G268700 Sobic010G080900--Sobic004G007700 Sobic001G343000 Sobic001G343000 Sobic010G080900--Sobic001G343000 Sobic004G064600 Sobic004G064600 Sobic010G080900--Sobic004G064600 Sobic010G002800--Sobic001G352800 Sobic003G085500 Sobic003G085500 Sobic010G002800--Sobic003G085500 Sobic003G388700 Sobic003G388700 Sobic010G002800--Sobic003G388700 Sobic002G232400 Sobic002G232400 Sobic010G002800--Sobic002G232400 Sobic001G309200 Sobic001G309200 Sobic010G002800--Sobic001G309200 Sobic004G186100 Sobic004G186100 Sobic010G002800--Sobic004G186100 Sobic002G222200 Sobic002G222200 Sobic010G002800--Sobic002G222200 Sobic001G073600 Sobic001G073600 Sobic010G002800--Sobic001G073600 Sobic010G002800--Sobic004G007700 Sobic007G140100--Sobic010G080900 Sobic007G140100--Sobic010G188900 Sobic008G047500 Sobic008G047500 Sobic007G140100--Sobic008G047500 Sobic007G140100--Sobic010G018900 Sobic007G010200 Sobic007G010200 Sobic007G140100--Sobic007G010200 Sobic001G203600 Sobic001G203600 Sobic007G140100--Sobic001G203600 Sobic007G140100--Sobic004G007700 Sobic001G268300 Sobic001G268300 Sobic007G140100--Sobic001G268300 Sobic007G140100--Sobic006G153200 Sobic001G167500--Sobic010G134100 Sobic001G413100 Sobic001G413100 Sobic001G167500--Sobic001G413100 Sobic001G167500--Sobic009G041800 Sobic001G167500--Sobic002G367800 Sobic001G167500--Sobic001G176900 Sobic003G130000 Sobic003G130000 Sobic001G167500--Sobic003G130000 Sobic004G082700 Sobic004G082700 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G167500--Sobic001G214900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.