Gene annotation
Transcriptome id Sobic.002G071100.1
Synonym Sb02g005960
Functional annotation expressed protein
UniProt C5XCM7
Pfam PF10236
Panther DB PTHR12810 PTHR12810:SF0
NCBI CDD KOG3928; Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3
KEGG Orthology K17408; DAP3, small subunit ribosomal protein S29
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16870 : mitochondrial 28S ribosomal protein S29-related
RAP-DB (Rice) LOC_Os07g10300.1 : expressed protein
MaizeGDB (Corn) Zm00025a016011
Brachypodium KQK20432 , KQK20433
Barley HORVU1Hr1G042020.3 , HORVU1Hr1G042020.2 , HORVU1Hr1G042020.1
Wheat TraesCS1B02G174500 , TraesCS1B02G174500 , TraesCS1D02G155800 , TraesCS1A02G158500
Populus -


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cDNA sequences
Sobic.002G071100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
2 Sobic.001G380600 insulin-degrading enzyme, putative, expressed K01411: nardilysin
3 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
4 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
5 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
6 Sobic.004G356300 expressed protein -
7 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
8 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
9 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
10 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
11 Sobic.004G348600 tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.003G048600 OsGrx_S15.1 - glutaredoxin subgroup II, expressed -
13 Sobic.004G007700 pentatricopeptide, putative, expressed -
14 Sobic.001G004200 uncharacterized protein yeiN, putative, expressed K16329: pseudouridylate synthase
15 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
16 Sobic.008G171400 phosphonate metabolism protein-related, putative, expressed -
17 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
18 Sobic.010G133400 pantothenate kinase 4, putative, expressed -
19 Sobic.002G125800 phosphoglucomutase, putative, expressed -
20 Sobic.003G166500 NAD dependent epimerase/dehydratase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G071100 Sobic002G071100 Sobic001G011000 Sobic001G011000 Sobic002G071100--Sobic001G011000 Sobic001G380600 Sobic001G380600 Sobic002G071100--Sobic001G380600 Sobic002G367800 Sobic002G367800 Sobic002G071100--Sobic002G367800 Sobic003G202100 Sobic003G202100 Sobic002G071100--Sobic003G202100 Sobic001G304000 Sobic001G304000 Sobic002G071100--Sobic001G304000 Sobic004G356300 Sobic004G356300 Sobic002G071100--Sobic004G356300 Sobic004G212100 Sobic004G212100 Sobic002G071100--Sobic004G212100 Sobic009G041800 Sobic009G041800 Sobic002G071100--Sobic009G041800 Sobic003G388900 Sobic003G388900 Sobic002G071100--Sobic003G388900 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic001G011000--Sobic002G071100 Sobic001G011000--Sobic004G356300 Sobic002G070300 Sobic002G070300 Sobic001G011000--Sobic002G070300 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic001G380600--Sobic002G071100 Sobic004G174700 Sobic004G174700 Sobic001G380600--Sobic004G174700 Sobic001G380600--Sobic001G011000 Sobic001G455000 Sobic001G455000 Sobic001G380600--Sobic001G455000 Sobic010G192600 Sobic010G192600 Sobic001G380600--Sobic010G192600 Sobic002G070600 Sobic002G070600 Sobic001G380600--Sobic002G070600 Sobic003G397900 Sobic003G397900 Sobic001G380600--Sobic003G397900 Sobic002G117600 Sobic002G117600 Sobic001G380600--Sobic002G117600 Sobic007G118500 Sobic007G118500 Sobic001G380600--Sobic007G118500 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic001G522000 Sobic001G522000 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G367800--Sobic002G070300 Sobic009G260700 Sobic009G260700 Sobic003G202100--Sobic009G260700 Sobic008G171400 Sobic008G171400 Sobic003G202100--Sobic008G171400 Sobic003G202100--Sobic001G304000 Sobic001G537100 Sobic001G537100 Sobic003G202100--Sobic001G537100 Sobic003G304400 Sobic003G304400 Sobic003G202100--Sobic003G304400 Sobic003G392600 Sobic003G392600 Sobic003G202100--Sobic003G392600 Sobic003G202100--Sobic002G071100 Sobic003G202100--Sobic003G388900 Sobic003G166500 Sobic003G166500 Sobic003G202100--Sobic003G166500 Sobic001G304000--Sobic003G202100 Sobic001G304000--Sobic008G171400 Sobic005G018800 Sobic005G018800 Sobic001G304000--Sobic005G018800 Sobic001G304000--Sobic002G071100 Sobic001G304000--Sobic003G388900 Sobic006G020900 Sobic006G020900 Sobic001G304000--Sobic006G020900 Sobic001G178500 Sobic001G178500 Sobic001G304000--Sobic001G178500 Sobic007G206300 Sobic007G206300 Sobic001G304000--Sobic007G206300 Sobic008G168200 Sobic008G168200 Sobic001G304000--Sobic008G168200 Sobic004G007700 Sobic004G007700 Sobic004G356300--Sobic004G007700 Sobic004G356300--Sobic001G011000 Sobic003G075200 Sobic003G075200 Sobic004G356300--Sobic003G075200 Sobic004G356300--Sobic002G367800 Sobic002G090500 Sobic002G090500 Sobic004G356300--Sobic002G090500 Sobic004G356300--Sobic008G057900 Sobic001G176900 Sobic001G176900 Sobic004G356300--Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic004G356300--Sobic010G134100 Sobic004G356300--Sobic002G071100 Sobic004G212100--Sobic002G367800 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic004G212100--Sobic003G388900 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic009G041800--Sobic004G212100 Sobic009G041800--Sobic001G011000 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic009G041800--Sobic010G134100 Sobic003G388900--Sobic002G367800 Sobic002G402500 Sobic002G402500 Sobic003G388900--Sobic002G402500 Sobic003G388900--Sobic001G522000 Sobic003G388900--Sobic003G202100 Sobic003G388900--Sobic004G212100 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic003G388900--Sobic001G413100 Sobic003G205400 Sobic003G205400 Sobic003G388900--Sobic003G205400
Octagon: transcription factors


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