Gene annotation
Transcriptome id Sobic.004G348600.1,Sobic.004G348600.2
Synonym Sb04g037530
Functional annotation tetratricopeptide repeat containing protein, putative, expressed
UniProt C5XVZ6
Pfam PF13424
Panther DB PTHR19959 PTHR19959:SF168
NCBI CDD KOG1840; Kinesin light chain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31240 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g57470.1 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032777
Brachypodium KQK01411
Barley -
Wheat TraesCS6B02G437800
Populus -


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cDNA sequences
Sobic.004G348600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G137500 expressed protein -
2 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
4 Sobic.004G174700 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
5 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
6 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
7 Sobic.001G004200 uncharacterized protein yeiN, putative, expressed K16329: pseudouridylate synthase
8 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
9 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
10 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
11 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
12 Sobic.004G030400 expressed protein -
13 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
14 Sobic.004G151200 RNA-binding protein-like, putative, expressed -
15 Sobic.003G304400 NLI interacting factor-like phosphatase, putative, expressed K17496: mitochondrial import inner membrane translocase subunit TIM50
16 Sobic.004G356200 expressed protein -
17 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
18 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
19 Sobic.003G397900 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed K12667: SWP1, oligosaccharyltransferase complex subunit delta (ribophorin II)
20 Sobic.010G161525 - -


Gene co-expression network
sample Sobic004G348600 Sobic004G348600 Sobic004G137500 Sobic004G137500 Sobic004G348600--Sobic004G137500 Sobic010G081700 Sobic010G081700 Sobic004G348600--Sobic010G081700 Sobic002G071100 Sobic002G071100 Sobic004G348600--Sobic002G071100 Sobic004G174700 Sobic004G174700 Sobic004G348600--Sobic004G174700 Sobic006G265600 Sobic006G265600 Sobic004G348600--Sobic006G265600 Sobic002G367800 Sobic002G367800 Sobic004G348600--Sobic002G367800 Sobic001G004200 Sobic001G004200 Sobic004G348600--Sobic001G004200 Sobic003G130000 Sobic003G130000 Sobic004G348600--Sobic003G130000 Sobic009G041800 Sobic009G041800 Sobic004G348600--Sobic009G041800 Sobic004G137500--Sobic004G348600 Sobic004G137500--Sobic010G081700 Sobic002G160700 Sobic002G160700 Sobic004G137500--Sobic002G160700 Sobic004G137500--Sobic006G265600 Sobic004G137500--Sobic001G004200 Sobic003G388900 Sobic003G388900 Sobic004G137500--Sobic003G388900 Sobic010G188000 Sobic010G188000 Sobic004G137500--Sobic010G188000 Sobic001G015400 Sobic001G015400 Sobic004G137500--Sobic001G015400 Sobic010G161525 Sobic010G161525 Sobic004G137500--Sobic010G161525 Sobic001G460500 Sobic001G460500 Sobic010G081700--Sobic001G460500 Sobic010G081700--Sobic004G348600 Sobic004G208500 Sobic004G208500 Sobic010G081700--Sobic004G208500 Sobic004G322300 Sobic004G322300 Sobic010G081700--Sobic004G322300 Sobic002G398700 Sobic002G398700 Sobic010G081700--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic010G081700--Sobic006G106300 Sobic002G408900 Sobic002G408900 Sobic010G081700--Sobic002G408900 Sobic004G356200 Sobic004G356200 Sobic010G081700--Sobic004G356200 Sobic002G150700 Sobic002G150700 Sobic010G081700--Sobic002G150700 Sobic001G011000 Sobic001G011000 Sobic002G071100--Sobic001G011000 Sobic001G380600 Sobic001G380600 Sobic002G071100--Sobic001G380600 Sobic002G071100--Sobic002G367800 Sobic003G202100 Sobic003G202100 Sobic002G071100--Sobic003G202100 Sobic001G304000 Sobic001G304000 Sobic002G071100--Sobic001G304000 Sobic004G356300 Sobic004G356300 Sobic002G071100--Sobic004G356300 Sobic004G212100 Sobic004G212100 Sobic002G071100--Sobic004G212100 Sobic002G071100--Sobic009G041800 Sobic002G071100--Sobic003G388900 Sobic010G178600 Sobic010G178600 Sobic004G174700--Sobic010G178600 Sobic009G118900 Sobic009G118900 Sobic004G174700--Sobic009G118900 Sobic004G336300 Sobic004G336300 Sobic004G174700--Sobic004G336300 Sobic004G034300 Sobic004G034300 Sobic004G174700--Sobic004G034300 Sobic002G070600 Sobic002G070600 Sobic004G174700--Sobic002G070600 Sobic004G174700--Sobic001G380600 Sobic004G174700--Sobic004G348600 Sobic004G174700--Sobic001G011000 Sobic004G174700--Sobic004G212100 Sobic003G397900 Sobic003G397900 Sobic006G265600--Sobic003G397900 Sobic001G474400 Sobic001G474400 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic006G265600--Sobic002G160700 Sobic009G120500 Sobic009G120500 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic001G522000 Sobic001G522000 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G070300 Sobic002G070300 Sobic002G367800--Sobic002G070300 Sobic001G004200--Sobic002G408900 Sobic003G405500 Sobic003G405500 Sobic001G004200--Sobic003G405500 Sobic001G004200--Sobic004G208500 Sobic001G004200--Sobic001G474400 Sobic002G125800 Sobic002G125800 Sobic001G004200--Sobic002G125800 Sobic001G004200--Sobic001G015400 Sobic002G199400 Sobic002G199400 Sobic001G004200--Sobic002G199400 Sobic004G283600 Sobic004G283600 Sobic001G004200--Sobic004G283600 Sobic010G179700 Sobic010G179700 Sobic001G004200--Sobic010G179700 Sobic003G130000--Sobic009G041800 Sobic001G167500 Sobic001G167500 Sobic003G130000--Sobic001G167500 Sobic003G235700 Sobic003G235700 Sobic003G130000--Sobic003G235700 Sobic010G134100 Sobic010G134100 Sobic003G130000--Sobic010G134100 Sobic006G251600 Sobic006G251600 Sobic003G130000--Sobic006G251600 Sobic003G205400 Sobic003G205400 Sobic003G130000--Sobic003G205400 Sobic003G008600 Sobic003G008600 Sobic003G130000--Sobic003G008600 Sobic005G098000 Sobic005G098000 Sobic003G130000--Sobic005G098000 Sobic001G268300 Sobic001G268300 Sobic003G130000--Sobic001G268300 Sobic009G041800--Sobic003G130000 Sobic009G041800--Sobic004G212100 Sobic009G041800--Sobic001G011000 Sobic009G041800--Sobic002G367800 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic009G041800--Sobic010G134100
Octagon: transcription factors


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