Gene annotation
Transcriptome id Sobic.010G161525.1
Synonym -
Functional annotation -
UniProt C5Z466
Pfam PF00687
Panther DB PTHR23105 PTHR23105:SF51
NCBI CDD KOG1570; 60S ribosomal protein L10A
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42710 : Ribosomal protein L1p/L10e family
RAP-DB (Rice) LOC_Os06g35470.1 : L1P family of ribosomal proteins domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050976
Brachypodium KQK18290 , KQK18289 , KQK18292 , KQK18291 , PNT75900
Barley HORVU7Hr1G089470.9 , HORVU7Hr1G089470.7 , HORVU7Hr1G089470.6 , HORVU7Hr1G089470.5 , HORVU7Hr1G089470.4 , HORVU7Hr1G089470.2 , HORVU7Hr1G089470.8 , HORVU7Hr1G089470.3 , HORVU7Hr1G089470.12 , HORVU7Hr1G089470.11 , HORVU7Hr1G089470.10
Wheat TraesCS7A02G352600 , TraesCS7D02G370500 , TraesCS7B02G275500 , TraesCS7D02G370500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
2 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
3 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
4 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
5 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
7 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
8 Sobic.007G188600 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
9 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
10 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
11 Sobic.004G348600 tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.003G144000 pentatricopeptide, putative, expressed -
13 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
14 Sobic.004G137500 expressed protein -
15 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
16 Sobic.004G082700 PPR repeat containing protein, expressed -
17 Sobic.002G152900 OsTOP6B - Topoisomerase 6 subunit B, expressed -
18 Sobic.004G356300 expressed protein -
19 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
20 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G161525 Sobic010G161525 Sobic005G098000 Sobic005G098000 Sobic010G161525--Sobic005G098000 Sobic010G134100 Sobic010G134100 Sobic010G161525--Sobic010G134100 Sobic003G235700 Sobic003G235700 Sobic010G161525--Sobic003G235700 Sobic007G114000 Sobic007G114000 Sobic010G161525--Sobic007G114000 Sobic004G212100 Sobic004G212100 Sobic010G161525--Sobic004G212100 Sobic001G167500 Sobic001G167500 Sobic010G161525--Sobic001G167500 Sobic002G367800 Sobic002G367800 Sobic010G161525--Sobic002G367800 Sobic007G188600 Sobic007G188600 Sobic010G161525--Sobic007G188600 Sobic002G071100 Sobic002G071100 Sobic010G161525--Sobic002G071100 Sobic005G098000--Sobic010G161525 Sobic008G111600 Sobic008G111600 Sobic005G098000--Sobic008G111600 Sobic003G144000 Sobic003G144000 Sobic005G098000--Sobic003G144000 Sobic006G206200 Sobic006G206200 Sobic005G098000--Sobic006G206200 Sobic003G412000 Sobic003G412000 Sobic005G098000--Sobic003G412000 Sobic003G432300 Sobic003G432300 Sobic005G098000--Sobic003G432300 Sobic003G130000 Sobic003G130000 Sobic005G098000--Sobic003G130000 Sobic005G088900 Sobic005G088900 Sobic005G098000--Sobic005G088900 Sobic010G038800 Sobic010G038800 Sobic005G098000--Sobic010G038800 Sobic010G134100--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic010G134100--Sobic001G413100 Sobic001G176900 Sobic001G176900 Sobic010G134100--Sobic001G176900 Sobic001G214900 Sobic001G214900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic004G356300 Sobic004G356300 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic009G041800 Sobic009G041800 Sobic010G134100--Sobic009G041800 Sobic004G082700 Sobic004G082700 Sobic010G134100--Sobic004G082700 Sobic003G235700--Sobic003G130000 Sobic009G176300 Sobic009G176300 Sobic003G235700--Sobic009G176300 Sobic003G235700--Sobic005G098000 Sobic007G140100 Sobic007G140100 Sobic003G235700--Sobic007G140100 Sobic008G163400 Sobic008G163400 Sobic003G235700--Sobic008G163400 Sobic003G235700--Sobic003G144000 Sobic003G235700--Sobic005G088900 Sobic003G235700--Sobic010G161525 Sobic001G268300 Sobic001G268300 Sobic003G235700--Sobic001G268300 Sobic005G100900 Sobic005G100900 Sobic007G114000--Sobic005G100900 Sobic006G035500 Sobic006G035500 Sobic007G114000--Sobic006G035500 Sobic010G188000 Sobic010G188000 Sobic007G114000--Sobic010G188000 Sobic002G152900 Sobic002G152900 Sobic007G114000--Sobic002G152900 Sobic009G071700 Sobic009G071700 Sobic007G114000--Sobic009G071700 Sobic007G114000--Sobic010G161525 Sobic006G157000 Sobic006G157000 Sobic007G114000--Sobic006G157000 Sobic002G412700 Sobic002G412700 Sobic007G114000--Sobic002G412700 Sobic001G368100 Sobic001G368100 Sobic007G114000--Sobic001G368100 Sobic004G212100--Sobic002G367800 Sobic001G011000 Sobic001G011000 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic003G388900 Sobic003G388900 Sobic004G212100--Sobic003G388900 Sobic002G070300 Sobic002G070300 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic001G522000 Sobic001G522000 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic001G167500--Sobic010G134100 Sobic001G167500--Sobic001G413100 Sobic001G167500--Sobic009G041800 Sobic001G167500--Sobic002G367800 Sobic001G167500--Sobic001G176900 Sobic001G167500--Sobic003G130000 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G167500--Sobic001G214900 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G367800--Sobic002G070300 Sobic006G198600 Sobic006G198600 Sobic007G188600--Sobic006G198600 Sobic006G281500 Sobic006G281500 Sobic007G188600--Sobic006G281500 Sobic002G402500 Sobic002G402500 Sobic007G188600--Sobic002G402500 Sobic002G423500 Sobic002G423500 Sobic007G188600--Sobic002G423500 Sobic007G188600--Sobic010G161525 Sobic006G251600 Sobic006G251600 Sobic007G188600--Sobic006G251600 Sobic007G188600--Sobic006G157000 Sobic009G081500 Sobic009G081500 Sobic007G188600--Sobic009G081500 Sobic008G083400 Sobic008G083400 Sobic007G188600--Sobic008G083400 Sobic002G071100--Sobic001G011000 Sobic001G380600 Sobic001G380600 Sobic002G071100--Sobic001G380600 Sobic002G071100--Sobic002G367800 Sobic003G202100 Sobic003G202100 Sobic002G071100--Sobic003G202100 Sobic001G304000 Sobic001G304000 Sobic002G071100--Sobic001G304000 Sobic002G071100--Sobic004G356300 Sobic002G071100--Sobic004G212100 Sobic002G071100--Sobic009G041800 Sobic002G071100--Sobic003G388900
Octagon: transcription factors


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