Gene annotation
Transcriptome id Sobic.003G130000.1
Synonym TOM40, Sb03g011060
Functional annotation outer mitochondrial membrane porin, putative, expressed
UniProt A0A1B6Q2V1
Pfam PF01459
Panther DB PTHR10802 PTHR10802:SF4
NCBI CDD KOG3296; Translocase of outer mitochondrial membrane complex, subunit TOM40
KEGG Orthology K11518; mitochondrial import receptor subunit TOM40
Gene Ontology GO:0005741; mitochondrial outer membrane


Orthologs (automatic annotation)
TAIR AT3G20000 : translocase of the outer mitochondrial membrane 40
RAP-DB (Rice) LOC_Os01g16910.1 : outer mitochondrial membrane porin, putative, expressed
MaizeGDB (Corn) Zm00025a024130 , Zm00025a052477 , Zm00025a035209
Brachypodium KQK03886
Barley -
Wheat TraesCS4A02G129200 , TraesCS4B02G175300 , TraesCS4D02G177200
Populus -


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cDNA sequences
Sobic.003G130000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
3 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
4 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
5 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
6 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
7 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
8 Sobic.005G098000 serpin domain containing protein, putative, expressed K13963: serpin B
9 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
10 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
11 Sobic.002G426400 OsLonP3 - Putative Lon protease homologue, expressed K08675: PRSS15, ATP-dependent Lon protease
12 Sobic.001G413100 nucleotide binding protein, putative, expressed -
13 Sobic.008G111600 heat shock protein, putative, expressed K09487: HSP90B, heat shock protein 90kDa beta
14 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
15 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
16 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
17 Sobic.003G144000 pentatricopeptide, putative, expressed -
18 Sobic.005G088900 AGAP007117-PA, putative, expressed -
19 Sobic.004G348600 tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.004G033500 expressed protein -


Gene co-expression network
sample Sobic003G130000 Sobic003G130000 Sobic009G041800 Sobic009G041800 Sobic003G130000--Sobic009G041800 Sobic001G167500 Sobic001G167500 Sobic003G130000--Sobic001G167500 Sobic003G235700 Sobic003G235700 Sobic003G130000--Sobic003G235700 Sobic010G134100 Sobic010G134100 Sobic003G130000--Sobic010G134100 Sobic006G251600 Sobic006G251600 Sobic003G130000--Sobic006G251600 Sobic003G205400 Sobic003G205400 Sobic003G130000--Sobic003G205400 Sobic003G008600 Sobic003G008600 Sobic003G130000--Sobic003G008600 Sobic005G098000 Sobic005G098000 Sobic003G130000--Sobic005G098000 Sobic001G268300 Sobic001G268300 Sobic003G130000--Sobic001G268300 Sobic009G041800--Sobic003G130000 Sobic004G212100 Sobic004G212100 Sobic009G041800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic009G041800--Sobic001G011000 Sobic002G367800 Sobic002G367800 Sobic009G041800--Sobic002G367800 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic009G041800--Sobic010G134100 Sobic001G167500--Sobic010G134100 Sobic001G167500--Sobic001G413100 Sobic001G167500--Sobic009G041800 Sobic001G167500--Sobic002G367800 Sobic001G176900 Sobic001G176900 Sobic001G167500--Sobic001G176900 Sobic001G167500--Sobic003G130000 Sobic004G082700 Sobic004G082700 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G214900 Sobic001G214900 Sobic001G167500--Sobic001G214900 Sobic003G235700--Sobic003G130000 Sobic009G176300 Sobic009G176300 Sobic003G235700--Sobic009G176300 Sobic003G235700--Sobic005G098000 Sobic007G140100 Sobic007G140100 Sobic003G235700--Sobic007G140100 Sobic008G163400 Sobic008G163400 Sobic003G235700--Sobic008G163400 Sobic003G144000 Sobic003G144000 Sobic003G235700--Sobic003G144000 Sobic005G088900 Sobic005G088900 Sobic003G235700--Sobic005G088900 Sobic010G161525 Sobic010G161525 Sobic003G235700--Sobic010G161525 Sobic003G235700--Sobic001G268300 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic004G356300 Sobic004G356300 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic010G134100--Sobic009G041800 Sobic010G134100--Sobic004G082700 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic002G402500 Sobic002G402500 Sobic003G205400--Sobic002G402500 Sobic003G205400--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic003G205400--Sobic001G522000 Sobic003G388900 Sobic003G388900 Sobic003G205400--Sobic003G388900 Sobic003G205400--Sobic002G367800 Sobic010G277000 Sobic010G277000 Sobic003G205400--Sobic010G277000 Sobic003G205400--Sobic010G134100 Sobic003G205400--Sobic001G413100 Sobic002G423500 Sobic002G423500 Sobic003G205400--Sobic002G423500 Sobic003G008600--Sobic001G008500 Sobic001G115500 Sobic001G115500 Sobic003G008600--Sobic001G115500 Sobic003G008600--Sobic002G423500 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic004G215700 Sobic004G215700 Sobic003G008600--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G008600--Sobic003G130000 Sobic005G098000--Sobic010G161525 Sobic008G111600 Sobic008G111600 Sobic005G098000--Sobic008G111600 Sobic005G098000--Sobic003G144000 Sobic006G206200 Sobic006G206200 Sobic005G098000--Sobic006G206200 Sobic003G412000 Sobic003G412000 Sobic005G098000--Sobic003G412000 Sobic003G432300 Sobic003G432300 Sobic005G098000--Sobic003G432300 Sobic005G098000--Sobic003G130000 Sobic005G098000--Sobic005G088900 Sobic010G038800 Sobic010G038800 Sobic005G098000--Sobic010G038800 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic006G262800 Sobic006G262800 Sobic001G268300--Sobic006G262800 Sobic002G362200 Sobic002G362200 Sobic001G268300--Sobic002G362200 Sobic008G031200 Sobic008G031200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700
Octagon: transcription factors


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