Gene annotation
Transcriptome id Sobic.001G008500.1
Synonym CPSF73-I, Sb01g000850
Functional annotation metallo-beta-lactamase, putative, expressed
UniProt C5WS11
Pfam PF07521 PF00753 PF10996 PF11718
Panther DB PTHR11203 PTHR11203:SF11
NCBI CDD -
KEGG Orthology K14403; CPSF3, cleavage and polyadenylation specificity factor subunit 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G61010 : cleavage and polyadenylation specificity factor 73-I
RAP-DB (Rice) LOC_Os03g63590.1 : metallo-beta-lactamase, putative, expressed
MaizeGDB (Corn) Zm00025a016314 , Zm00025a009081
Brachypodium KQK12040 , KQK12041 , PNT73774 , KQK12032 , KQK12031
Barley HORVU5Hr1G123370.1 , HORVU5Hr1G123370.3 , HORVU5Hr1G123370.2 , HORVU5Hr1G123370.5 , HORVU5Hr1G123370.4 , HORVU5Hr1G123370.7 , HORVU5Hr1G088510.1 , HORVU5Hr1G088510.8 , HORVU5Hr1G088510.3 , HORVU5Hr1G088510.2 , HORVU5Hr1G088510.5 , HORVU5Hr1G088510.4 , HORVU5Hr1G088510.6 , HORVU5Hr1G088510.7
Wheat TraesCS5B02G360900 , TraesCS5D02G367600 , TraesCS5A02G358600 , TraesCS5B02G537400 , TraesCS4A02G336600 , TraesCS4A02G324800 , TraesCS5B02G536400 , TraesCS5D02G555600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
2 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
3 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
4 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
5 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
7 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
8 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
9 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
10 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
11 Sobic.006G041100 nuclear transport factor 2, putative, expressed -
12 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
14 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
15 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
16 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
17 Sobic.004G082700 PPR repeat containing protein, expressed -
18 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
19 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
20 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin


Gene co-expression network
sample Sobic001G008500 Sobic001G008500 Sobic004G047200 Sobic004G047200 Sobic001G008500--Sobic004G047200 Sobic006G251600 Sobic006G251600 Sobic001G008500--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic001G008500--Sobic003G008600 Sobic001G115500 Sobic001G115500 Sobic001G008500--Sobic001G115500 Sobic009G071700 Sobic009G071700 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic002G423500 Sobic002G423500 Sobic001G008500--Sobic002G423500 Sobic001G371100 Sobic001G371100 Sobic001G008500--Sobic001G371100 Sobic004G326600 Sobic004G326600 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic004G047200--Sobic002G014400 Sobic004G047200--Sobic001G008500 Sobic005G163700 Sobic005G163700 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic004G047200--Sobic001G460500 Sobic004G047200--Sobic001G371100 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic003G008600--Sobic001G008500 Sobic003G008600--Sobic001G115500 Sobic003G008600--Sobic002G423500 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic003G008600--Sobic004G215700 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G115500--Sobic001G008500 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic006G127500 Sobic006G127500 Sobic001G436300--Sobic006G127500 Sobic001G235700 Sobic001G235700 Sobic001G436300--Sobic001G235700 Sobic001G436300--Sobic001G115500 Sobic003G274400 Sobic003G274400 Sobic001G436300--Sobic003G274400 Sobic001G436300--Sobic001G008500 Sobic006G245700 Sobic006G245700 Sobic001G436300--Sobic006G245700 Sobic004G343600 Sobic004G343600 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic002G423500--Sobic004G326600 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic001G371100--Sobic004G047200 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200
Octagon: transcription factors


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