Gene annotation
Transcriptome id Sobic.008G017200.2,Sobic.008G017200.1
Synonym Sb08g001495
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6PB95 , A0A1B6PAV8
Pfam -
Panther DB PTHR14494 PTHR14494:SF0
NCBI CDD KOG2139; WD40 repeat protein
KEGG Orthology K14320; aladin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56900 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os12g03540.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053710 , Zm00025a053697
Brachypodium KQJ92441 , KQJ92442
Barley HORVU5Hr1G045070.10 , HORVU5Hr1G045070.5 , HORVU5Hr1G045070.4 , HORVU5Hr1G045070.7 , HORVU5Hr1G045070.6 , HORVU5Hr1G045070.1 , HORVU5Hr1G045070.3 , HORVU5Hr1G045070.2 , HORVU5Hr1G045070.9 , HORVU5Hr1G045070.8
Wheat TraesCS5B02G138600 , TraesCS5B02G138600 , TraesCS5A02G138500 , TraesCS5D02G152200
Populus -


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cDNA sequences
Sobic.008G017200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
2 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
3 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
4 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
5 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
6 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
7 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
8 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
9 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
10 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
11 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
12 Sobic.003G309300 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
13 Sobic.001G456800 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
14 Sobic.007G200900 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
15 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
16 Sobic.006G035500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
17 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
18 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
19 Sobic.006G221400 expressed protein -
20 Sobic.010G103200 ThiF family domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G017200 Sobic008G017200 Sobic006G157000 Sobic006G157000 Sobic008G017200--Sobic006G157000 Sobic001G008500 Sobic001G008500 Sobic008G017200--Sobic001G008500 Sobic009G071700 Sobic009G071700 Sobic008G017200--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic008G017200--Sobic010G188000 Sobic006G010000 Sobic006G010000 Sobic008G017200--Sobic006G010000 Sobic004G047200 Sobic004G047200 Sobic008G017200--Sobic004G047200 Sobic009G045900 Sobic009G045900 Sobic008G017200--Sobic009G045900 Sobic002G365900 Sobic002G365900 Sobic008G017200--Sobic002G365900 Sobic006G251600 Sobic006G251600 Sobic008G017200--Sobic006G251600 Sobic003G309300 Sobic003G309300 Sobic006G157000--Sobic003G309300 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic010G216300 Sobic010G216300 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic006G157000--Sobic008G017200 Sobic006G010400 Sobic006G010400 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000 Sobic001G008500--Sobic004G047200 Sobic001G008500--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic001G008500--Sobic003G008600 Sobic001G115500 Sobic001G115500 Sobic001G008500--Sobic001G115500 Sobic001G008500--Sobic009G071700 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic002G423500 Sobic002G423500 Sobic001G008500--Sobic002G423500 Sobic001G371100 Sobic001G371100 Sobic001G008500--Sobic001G371100 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic004G173100 Sobic004G173100 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic001G373000 Sobic001G373000 Sobic010G188000--Sobic001G373000 Sobic004G038100 Sobic004G038100 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic004G315500 Sobic004G315500 Sobic010G188000--Sobic004G315500 Sobic005G010900 Sobic005G010900 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic003G293300 Sobic003G293300 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic001G114500 Sobic001G114500 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic001G234200 Sobic001G234200 Sobic006G010000--Sobic001G234200 Sobic002G071000 Sobic002G071000 Sobic006G010000--Sobic002G071000 Sobic004G326600 Sobic004G326600 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic004G047200--Sobic002G014400 Sobic004G047200--Sobic001G008500 Sobic005G163700 Sobic005G163700 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic004G047200--Sobic001G460500 Sobic004G047200--Sobic001G371100 Sobic008G135200 Sobic008G135200 Sobic009G045900--Sobic008G135200 Sobic002G047000 Sobic002G047000 Sobic009G045900--Sobic002G047000 Sobic002G246700 Sobic002G246700 Sobic009G045900--Sobic002G246700 Sobic002G408900 Sobic002G408900 Sobic009G045900--Sobic002G408900 Sobic001G090100 Sobic001G090100 Sobic009G045900--Sobic001G090100 Sobic003G314700 Sobic003G314700 Sobic009G045900--Sobic003G314700 Sobic010G206300 Sobic010G206300 Sobic009G045900--Sobic010G206300 Sobic001G248100 Sobic001G248100 Sobic009G045900--Sobic001G248100 Sobic001G537500 Sobic001G537500 Sobic009G045900--Sobic001G537500 Sobic002G365900--Sobic006G251600 Sobic002G365900--Sobic003G008600 Sobic002G365900--Sobic001G008500 Sobic002G365900--Sobic002G423500 Sobic002G365900--Sobic009G071700 Sobic004G252000 Sobic004G252000 Sobic002G365900--Sobic004G252000 Sobic001G488100 Sobic001G488100 Sobic002G365900--Sobic001G488100 Sobic010G205900 Sobic010G205900 Sobic002G365900--Sobic010G205900 Sobic002G365900--Sobic004G173100 Sobic006G251600--Sobic009G071700 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100
Octagon: transcription factors


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