Gene annotation
Transcriptome id Sobic.007G200900.1
Synonym Sb07g026850
Functional annotation pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed
UniProt A0A1B6PIR7
Pfam PF13883
Panther DB PTHR13343 PTHR13343:SF16
NCBI CDD KOG3374; Cellular repressor of transcription
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G51560 : Pyridoxamine 5\'-phosphate oxidase family protein
RAP-DB (Rice) LOC_Os08g40570.1 : pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005179
Brachypodium KQJ99029
Barley HORVU7Hr1G052520.1 , HORVU7Hr1G052520.3 , HORVU7Hr1G052520.2 , HORVU7Hr1G052520.5 , HORVU7Hr1G052520.4 , HORVU7Hr1G052520.7 , HORVU7Hr1G052520.6 , HORVU7Hr1G052520.9 , HORVU7Hr1G052520.8 , HORVU7Hr1G052520.10
Wheat TraesCS7B02G150400 , TraesCS7B02G150400 , TraesCS7D02G252700 , TraesCS7D02G252700 , TraesCS7A02G254200 , TraesCS7A02G254200
Populus -


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cDNA sequences
Sobic.007G200900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
2 Sobic.002G428800 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
3 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
4 Sobic.001G473800 trpH, putative, expressed K07053: 3',5'-nucleoside bisphosphate phosphatase
5 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
6 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
7 Sobic.003G444600 TGD2, putative, expressed -
8 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
9 Sobic.001G449900 conserved oligomeric complex COG6 family protein, expressed -
10 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
11 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
12 Sobic.002G405400 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, putative, expressed K01001: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
13 Sobic.004G252900 transcription factor IIA large subunit, putative, expressed K03122: TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
14 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
15 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
16 Sobic.001G358500 GA20734-PA, putative, expressed -
17 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
18 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
19 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
20 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23


Gene co-expression network
sample Sobic007G200900 Sobic007G200900 Sobic006G196300 Sobic006G196300 Sobic007G200900--Sobic006G196300 Sobic002G428800 Sobic002G428800 Sobic007G200900--Sobic002G428800 Sobic009G149500 Sobic009G149500 Sobic007G200900--Sobic009G149500 Sobic001G473800 Sobic001G473800 Sobic007G200900--Sobic001G473800 Sobic010G223300 Sobic010G223300 Sobic007G200900--Sobic010G223300 Sobic001G434200 Sobic001G434200 Sobic007G200900--Sobic001G434200 Sobic003G444600 Sobic003G444600 Sobic007G200900--Sobic003G444600 Sobic007G112600 Sobic007G112600 Sobic007G200900--Sobic007G112600 Sobic001G449900 Sobic001G449900 Sobic007G200900--Sobic001G449900 Sobic003G264100 Sobic003G264100 Sobic006G196300--Sobic003G264100 Sobic002G405400 Sobic002G405400 Sobic006G196300--Sobic002G405400 Sobic001G455800 Sobic001G455800 Sobic006G196300--Sobic001G455800 Sobic002G142900 Sobic002G142900 Sobic006G196300--Sobic002G142900 Sobic010G020400 Sobic010G020400 Sobic006G196300--Sobic010G020400 Sobic001G333100 Sobic001G333100 Sobic006G196300--Sobic001G333100 Sobic001G227400 Sobic001G227400 Sobic006G196300--Sobic001G227400 Sobic004G241900 Sobic004G241900 Sobic006G196300--Sobic004G241900 Sobic002G303600 Sobic002G303600 Sobic006G196300--Sobic002G303600 Sobic005G140500 Sobic005G140500 Sobic002G428800--Sobic005G140500 Sobic004G262700 Sobic004G262700 Sobic002G428800--Sobic004G262700 Sobic002G428800--Sobic007G200900 Sobic001G501300 Sobic001G501300 Sobic002G428800--Sobic001G501300 Sobic003G134000 Sobic003G134000 Sobic002G428800--Sobic003G134000 Sobic003G378400 Sobic003G378400 Sobic002G428800--Sobic003G378400 Sobic010G176300 Sobic010G176300 Sobic002G428800--Sobic010G176300 Sobic004G290000 Sobic004G290000 Sobic002G428800--Sobic004G290000 Sobic010G100800 Sobic010G100800 Sobic002G428800--Sobic010G100800 Sobic001G206900 Sobic001G206900 Sobic009G149500--Sobic001G206900 Sobic009G149500--Sobic010G020400 Sobic007G188300 Sobic007G188300 Sobic009G149500--Sobic007G188300 Sobic009G149500--Sobic010G223300 Sobic001G014800 Sobic001G014800 Sobic009G149500--Sobic001G014800 Sobic009G192000 Sobic009G192000 Sobic009G149500--Sobic009G192000 Sobic004G181900 Sobic004G181900 Sobic009G149500--Sobic004G181900 Sobic004G010900 Sobic004G010900 Sobic009G149500--Sobic004G010900 Sobic003G338500 Sobic003G338500 Sobic009G149500--Sobic003G338500 Sobic005G111900 Sobic005G111900 Sobic001G473800--Sobic005G111900 Sobic003G196200 Sobic003G196200 Sobic001G473800--Sobic003G196200 Sobic001G304000 Sobic001G304000 Sobic001G473800--Sobic001G304000 Sobic001G387800 Sobic001G387800 Sobic001G473800--Sobic001G387800 Sobic008G110500 Sobic008G110500 Sobic001G473800--Sobic008G110500 Sobic001G178500 Sobic001G178500 Sobic001G473800--Sobic001G178500 Sobic002G199400 Sobic002G199400 Sobic001G473800--Sobic002G199400 Sobic002G402500 Sobic002G402500 Sobic001G473800--Sobic002G402500 Sobic006G029000 Sobic006G029000 Sobic001G473800--Sobic006G029000 Sobic008G055900 Sobic008G055900 Sobic010G223300--Sobic008G055900 Sobic010G223300--Sobic001G449900 Sobic002G020700 Sobic002G020700 Sobic010G223300--Sobic002G020700 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic010G223300--Sobic002G008800 Sobic006G180000 Sobic006G180000 Sobic010G223300--Sobic006G180000 Sobic007G071900 Sobic007G071900 Sobic001G434200--Sobic007G071900 Sobic006G093300 Sobic006G093300 Sobic001G434200--Sobic006G093300 Sobic006G039400 Sobic006G039400 Sobic001G434200--Sobic006G039400 Sobic001G468600 Sobic001G468600 Sobic001G434200--Sobic001G468600 Sobic001G434200--Sobic001G333100 Sobic004G171200 Sobic004G171200 Sobic001G434200--Sobic004G171200 Sobic008G087900 Sobic008G087900 Sobic001G434200--Sobic008G087900 Sobic004G121300 Sobic004G121300 Sobic001G434200--Sobic004G121300 Sobic001G434200--Sobic001G014800 Sobic003G444600--Sobic009G149500 Sobic003G444600--Sobic001G434200 Sobic003G444600--Sobic005G111900 Sobic003G444600--Sobic007G200900 Sobic004G175300 Sobic004G175300 Sobic003G444600--Sobic004G175300 Sobic003G444600--Sobic007G188300 Sobic003G444600--Sobic001G304000 Sobic001G207500 Sobic001G207500 Sobic003G444600--Sobic001G207500 Sobic003G444600--Sobic001G473800 Sobic001G015400 Sobic001G015400 Sobic007G112600--Sobic001G015400 Sobic003G146600 Sobic003G146600 Sobic007G112600--Sobic003G146600 Sobic002G150700 Sobic002G150700 Sobic007G112600--Sobic002G150700 Sobic004G208500 Sobic004G208500 Sobic007G112600--Sobic004G208500 Sobic001G145400 Sobic001G145400 Sobic007G112600--Sobic001G145400 Sobic007G112600--Sobic010G223300 Sobic001G471000 Sobic001G471000 Sobic007G112600--Sobic001G471000 Sobic008G103300 Sobic008G103300 Sobic007G112600--Sobic008G103300 Sobic006G083100 Sobic006G083100 Sobic007G112600--Sobic006G083100 Sobic001G449900--Sobic010G223300 Sobic001G449900--Sobic002G020700 Sobic008G085700 Sobic008G085700 Sobic001G449900--Sobic008G085700 Sobic001G301200 Sobic001G301200 Sobic001G449900--Sobic001G301200 Sobic003G189600 Sobic003G189600 Sobic001G449900--Sobic003G189600 Sobic001G428800 Sobic001G428800 Sobic001G449900--Sobic001G428800 Sobic003G029600 Sobic003G029600 Sobic001G449900--Sobic003G029600 Sobic001G449900--Sobic010G020400 Sobic007G005500 Sobic007G005500 Sobic001G449900--Sobic007G005500
Octagon: transcription factors


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