Gene annotation
Transcriptome id Sobic.004G252900.1
Synonym
Functional annotation transcription factor IIA large subunit, putative, expressed
UniProt A0A1Z5RP71
Pfam PF03153
Panther DB PTHR12694 PTHR12694:SF8
NCBI CDD KOG2652; RNA polymerase II transcription initiation factor TFIIA, large chain
KEGG Orthology K03122; TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
Gene Ontology GO:0006367; transcription initiation from RNA polymerase II promoter GO:0005672transcription factor TFIIA complex


Orthologs (automatic annotation)
TAIR AT1G07480 : Transcription factor IIA, alpha/beta subunit
RAP-DB (Rice) LOC_Os05g22670.1 : transcription factor IIA large subunit, putative, expressed
MaizeGDB (Corn) Zm00025a043236 , Zm00025a036943
Brachypodium KQK06889
Barley HORVU1Hr1G034730.6 , HORVU1Hr1G034730.7 , HORVU1Hr1G034730.4 , HORVU1Hr1G034730.5 , HORVU1Hr1G034730.2 , HORVU1Hr1G034730.3 , HORVU5Hr1G105710.2 , HORVU1Hr1G034730.1
Wheat TraesCS1A02G131200 , TraesCS1A02G131200 , TraesCS1A02G131200 , TraesCS1D02G137000 , TraesCS1D02G137000 , TraesCS1B02G154800 , TraesCS1D02G137000 , TraesCS1B02G154800 , TraesCS1B02G154800
Populus -


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cDNA sequences
Sobic.004G252900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
2 Sobic.002G185900 zinc finger protein-related, putative, expressed -
3 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
4 Sobic.002G117400 expressed protein -
5 Sobic.003G379200 wound-responsive family protein, putative, expressed -
6 Sobic.010G275400 expressed protein -
7 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
8 Sobic.004G028100 expressed protein -
9 Sobic.001G019800 FAD binding domain containing protein, expressed K06126: ubiquinone biosynthesis monooxygenase Coq6
10 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
11 Sobic.002G389900 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed -
12 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
13 Sobic.001G237600 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
14 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
16 Sobic.003G373500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
17 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
18 Sobic.001G341500 transcription initiation factor IID, putative, expressed K03133: TAF9B, transcription initiation factor TFIID subunit 9B
19 Sobic.003G202600 single myb histone, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B


Gene co-expression network
sample Sobic004G252900 Sobic004G252900 Sobic006G196300 Sobic006G196300 Sobic004G252900--Sobic006G196300 Sobic002G185900 Sobic002G185900 Sobic004G252900--Sobic002G185900 Sobic003G264100 Sobic003G264100 Sobic004G252900--Sobic003G264100 Sobic002G117400 Sobic002G117400 Sobic004G252900--Sobic002G117400 Sobic003G379200 Sobic003G379200 Sobic004G252900--Sobic003G379200 Sobic010G275400 Sobic010G275400 Sobic004G252900--Sobic010G275400 Sobic006G039400 Sobic006G039400 Sobic004G252900--Sobic006G039400 Sobic004G028100 Sobic004G028100 Sobic004G252900--Sobic004G028100 Sobic001G019800 Sobic001G019800 Sobic004G252900--Sobic001G019800 Sobic006G196300--Sobic003G264100 Sobic002G405400 Sobic002G405400 Sobic006G196300--Sobic002G405400 Sobic001G455800 Sobic001G455800 Sobic006G196300--Sobic001G455800 Sobic002G142900 Sobic002G142900 Sobic006G196300--Sobic002G142900 Sobic010G020400 Sobic010G020400 Sobic006G196300--Sobic010G020400 Sobic001G333100 Sobic001G333100 Sobic006G196300--Sobic001G333100 Sobic001G227400 Sobic001G227400 Sobic006G196300--Sobic001G227400 Sobic004G241900 Sobic004G241900 Sobic006G196300--Sobic004G241900 Sobic002G303600 Sobic002G303600 Sobic006G196300--Sobic002G303600 Sobic002G185900--Sobic004G252900 Sobic001G358500 Sobic001G358500 Sobic002G185900--Sobic001G358500 Sobic003G132000 Sobic003G132000 Sobic002G185900--Sobic003G132000 Sobic008G145100 Sobic008G145100 Sobic002G185900--Sobic008G145100 Sobic001G114500 Sobic001G114500 Sobic002G185900--Sobic001G114500 Sobic005G144201 Sobic005G144201 Sobic002G185900--Sobic005G144201 Sobic006G049700 Sobic006G049700 Sobic002G185900--Sobic006G049700 Sobic009G131900 Sobic009G131900 Sobic002G185900--Sobic009G131900 Sobic005G158300 Sobic005G158300 Sobic002G185900--Sobic005G158300 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic004G323700 Sobic004G323700 Sobic002G117400--Sobic004G323700 Sobic007G093800 Sobic007G093800 Sobic002G117400--Sobic007G093800 Sobic007G167900 Sobic007G167900 Sobic002G117400--Sobic007G167900 Sobic002G117400--Sobic010G020400 Sobic002G117400--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic002G117400--Sobic002G008800 Sobic008G083200 Sobic008G083200 Sobic002G117400--Sobic008G083200 Sobic010G020300 Sobic010G020300 Sobic002G117400--Sobic010G020300 Sobic009G192000 Sobic009G192000 Sobic002G117400--Sobic009G192000 Sobic006G261400 Sobic006G261400 Sobic003G379200--Sobic006G261400 Sobic009G044800 Sobic009G044800 Sobic003G379200--Sobic009G044800 Sobic006G088200 Sobic006G088200 Sobic003G379200--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G379200--Sobic003G360400 Sobic003G379200--Sobic008G083200 Sobic010G000800 Sobic010G000800 Sobic003G379200--Sobic010G000800 Sobic001G354600 Sobic001G354600 Sobic003G379200--Sobic001G354600 Sobic003G363700 Sobic003G363700 Sobic003G379200--Sobic003G363700 Sobic006G174850 Sobic006G174850 Sobic003G379200--Sobic006G174850 Sobic001G441400 Sobic001G441400 Sobic010G275400--Sobic001G441400 Sobic010G226000 Sobic010G226000 Sobic010G275400--Sobic010G226000 Sobic010G275400--Sobic009G068500 Sobic010G275400--Sobic003G264100 Sobic010G275400--Sobic004G252900 Sobic010G275400--Sobic004G028100 Sobic008G185800 Sobic008G185800 Sobic010G275400--Sobic008G185800 Sobic010G275400--Sobic006G174850 Sobic004G321100 Sobic004G321100 Sobic010G275400--Sobic004G321100 Sobic006G093300 Sobic006G093300 Sobic006G039400--Sobic006G093300 Sobic001G405600 Sobic001G405600 Sobic006G039400--Sobic001G405600 Sobic003G296900 Sobic003G296900 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic007G162100 Sobic007G162100 Sobic006G039400--Sobic007G162100 Sobic007G087000 Sobic007G087000 Sobic006G039400--Sobic007G087000 Sobic001G283600 Sobic001G283600 Sobic006G039400--Sobic001G283600 Sobic004G028100--Sobic002G303600 Sobic009G092400 Sobic009G092400 Sobic004G028100--Sobic009G092400 Sobic004G028100--Sobic006G180000 Sobic009G249700 Sobic009G249700 Sobic004G028100--Sobic009G249700 Sobic007G218000 Sobic007G218000 Sobic004G028100--Sobic007G218000 Sobic003G173600 Sobic003G173600 Sobic004G028100--Sobic003G173600 Sobic010G243400 Sobic010G243400 Sobic004G028100--Sobic010G243400 Sobic001G449900 Sobic001G449900 Sobic004G028100--Sobic001G449900 Sobic004G028100--Sobic003G264100 Sobic001G019800--Sobic007G093800 Sobic001G019800--Sobic002G117400 Sobic003G193500 Sobic003G193500 Sobic001G019800--Sobic003G193500 Sobic001G019800--Sobic004G252900 Sobic001G019800--Sobic003G264100 Sobic004G092500 Sobic004G092500 Sobic001G019800--Sobic004G092500 Sobic010G092300 Sobic010G092300 Sobic001G019800--Sobic010G092300 Sobic005G160400 Sobic005G160400 Sobic001G019800--Sobic005G160400 Sobic010G265300 Sobic010G265300 Sobic001G019800--Sobic010G265300
Octagon: transcription factors


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