Gene annotation
Transcriptome id Sobic.001G333100.1
Synonym Sb01g032170
Functional annotation U-box domain-containing protein, putative, expressed
UniProt C5WWH4
Pfam PF04564 PF10408
Panther DB PTHR13931 PTHR13931:SF2
NCBI CDD -
KEGG Orthology K10597; UBE4B, ubiquitin conjugation factor E4 B
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity GO:0006511ubiquitin-dependent protein catabolic process GO:0000151ubiquitin ligase complex


Orthologs (automatic annotation)
TAIR AT5G15400 : U-box domain-containing protein
RAP-DB (Rice) LOC_Os03g31400.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002916 , Zm00025a052205 , Zm00025a002949
Brachypodium KQK14424
Barley HORVU7Hr1G108540.3 , HORVU7Hr1G108540.2 , HORVU7Hr1G108540.9 , HORVU7Hr1G108540.8 , HORVU7Hr1G108540.1 , HORVU7Hr1G108540.7 , HORVU7Hr1G108540.6 , HORVU7Hr1G108540.5 , HORVU7Hr1G108540.4 , HORVU7Hr1G108540.10
Wheat -
Populus -


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cDNA sequences
Sobic.001G333100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
2 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
3 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
4 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
5 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
6 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
7 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
8 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
9 Sobic.008G033500 nucleolar GTPase, putative, expressed -
10 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
11 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
12 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
13 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
14 Sobic.001G355800 methyltransferase, putative, expressed -
15 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
16 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.009G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.008G070800 expressed protein -
19 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
20 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -


Gene co-expression network
sample Sobic001G333100 Sobic001G333100 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic010G020400 Sobic010G020400 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic008G055900 Sobic008G055900 Sobic002G020700--Sobic008G055900 Sobic002G020700--Sobic001G333100 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic003G221400--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic003G221400--Sobic005G162500 Sobic001G493700 Sobic001G493700 Sobic003G221400--Sobic001G493700 Sobic001G110600 Sobic001G110600 Sobic003G221400--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic003G221400--Sobic001G004400 Sobic003G221400--Sobic001G333100 Sobic002G179400 Sobic002G179400 Sobic003G221400--Sobic002G179400 Sobic003G221400--Sobic001G192000 Sobic008G085300 Sobic008G085300 Sobic003G221400--Sobic008G085300 Sobic002G275700 Sobic002G275700 Sobic001G192000--Sobic002G275700 Sobic009G255700 Sobic009G255700 Sobic001G192000--Sobic009G255700 Sobic001G192000--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic001G192000--Sobic008G088872 Sobic001G192000--Sobic001G333100 Sobic001G192000--Sobic003G195000 Sobic002G146300 Sobic002G146300 Sobic001G192000--Sobic002G146300 Sobic001G370900 Sobic001G370900 Sobic001G192000--Sobic001G370900 Sobic001G192000--Sobic003G221400 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic003G338500 Sobic003G338500 Sobic010G020400--Sobic003G338500 Sobic001G014800 Sobic001G014800 Sobic010G020400--Sobic001G014800 Sobic002G008800 Sobic002G008800 Sobic010G020400--Sobic002G008800 Sobic010G020400--Sobic008G055900 Sobic010G020400--Sobic008G033500 Sobic010G020400--Sobic001G333100 Sobic010G020400--Sobic010G223300 Sobic004G131300 Sobic004G131300 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G133300 Sobic002G133300 Sobic002G142900--Sobic002G133300 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic010G223300--Sobic008G055900 Sobic010G223300--Sobic001G449900 Sobic010G223300--Sobic002G020700 Sobic010G223300--Sobic003G338500 Sobic006G260500 Sobic006G260500 Sobic010G223300--Sobic006G260500 Sobic004G092500 Sobic004G092500 Sobic010G223300--Sobic004G092500 Sobic010G223300--Sobic010G020400 Sobic010G223300--Sobic002G008800 Sobic010G223300--Sobic006G180000 Sobic001G251100--Sobic003G104000 Sobic001G251100--Sobic002G256700 Sobic001G251100--Sobic004G131300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic001G251100--Sobic007G054800 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic008G033500--Sobic010G020400 Sobic008G033500--Sobic001G014800 Sobic008G033500--Sobic001G333100 Sobic008G033500--Sobic002G020700 Sobic007G162100 Sobic007G162100 Sobic008G033500--Sobic007G162100 Sobic006G127600 Sobic006G127600 Sobic008G033500--Sobic006G127600 Sobic003G422900 Sobic003G422900 Sobic008G033500--Sobic003G422900 Sobic008G033500--Sobic009G068500 Sobic001G193300 Sobic001G193300 Sobic008G033500--Sobic001G193300
Octagon: transcription factors


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