Gene annotation
Transcriptome id Sobic.002G311100.1,Sobic.002G311100.2
Synonym Sb02g034080
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6QEE9
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF71
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G20650 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os07g31850.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048142
Brachypodium KQK16111
Barley HORVU2Hr1G048840.12 , HORVU2Hr1G048840.13 , HORVU2Hr1G048840.10 , HORVU2Hr1G048840.11 , HORVU2Hr1G048840.16 , HORVU2Hr1G048840.17 , HORVU2Hr1G048840.14 , HORVU2Hr1G048840.15 , HORVU2Hr1G048840.18 , HORVU2Hr1G048840.19 , HORVU2Hr1G048840.29 , HORVU2Hr1G048840.28 , HORVU2Hr1G048840.23 , HORVU2Hr1G048840.22 , HORVU2Hr1G048840.21 , HORVU2Hr1G048840.20 , HORVU2Hr1G048840.27 , HORVU2Hr1G048840.26 , HORVU2Hr1G048840.25 , HORVU2Hr1G048840.24 , HORVU2Hr1G048840.30 , HORVU2Hr1G048840.31 , HORVU2Hr1G048840.32 , HORVU2Hr1G048840.8 , HORVU2Hr1G048840.9 , HORVU2Hr1G048840.1 , HORVU2Hr1G048840.2 , HORVU2Hr1G048840.3 , HORVU2Hr1G048840.4 , HORVU2Hr1G048840.5 , HORVU2Hr1G048840.6 , HORVU2Hr1G048840.7
Wheat TraesCS2D02G232900 , TraesCS2D02G232900 , TraesCS2D02G232900 , TraesCS2D02G232900 , TraesCS2D02G232900 , TraesCS2A02G232200 , TraesCS2A02G232200 , TraesCS2A02G232200 , TraesCS2B02G250800 , TraesCS2B02G250800
Populus -


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cDNA sequences
Sobic.002G311100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
2 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
4 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
5 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
6 Sobic.010G074300 smr domain containing protein, expressed -
7 Sobic.009G143700 no apical meristem protein, putative, expressed -
8 Sobic.009G201300 - -
9 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
10 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
12 Sobic.003G110000 TBC domain containing protein, expressed -
13 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
14 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
15 Sobic.007G190000 expressed protein -
16 Sobic.003G316500 expressed protein -
17 Sobic.003G139800 protein kinase, putative, expressed K13436: pto-interacting protein 1
18 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
19 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
20 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3


Gene co-expression network
sample Sobic002G311100 Sobic002G311100 Sobic010G147100 Sobic010G147100 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic010G074300 Sobic010G074300 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic009G053900 Sobic009G053900 Sobic010G147100--Sobic009G053900 Sobic001G268200 Sobic001G268200 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic009G074400--Sobic003G316500 Sobic001G534700 Sobic001G534700 Sobic009G074400--Sobic001G534700 Sobic003G155100 Sobic003G155100 Sobic009G074400--Sobic003G155100 Sobic003G198800 Sobic003G198800 Sobic009G074400--Sobic003G198800 Sobic009G074400--Sobic002G311100 Sobic006G051800 Sobic006G051800 Sobic009G074400--Sobic006G051800 Sobic006G219600 Sobic006G219600 Sobic009G074400--Sobic006G219600 Sobic008G001200 Sobic008G001200 Sobic009G074400--Sobic008G001200 Sobic004G001500 Sobic004G001500 Sobic009G074400--Sobic004G001500 Sobic010G013200--Sobic001G268200 Sobic008G081300 Sobic008G081300 Sobic010G013200--Sobic008G081300 Sobic010G013200--Sobic002G311100 Sobic001G049500 Sobic001G049500 Sobic010G013200--Sobic001G049500 Sobic002G294800 Sobic002G294800 Sobic010G013200--Sobic002G294800 Sobic006G086500 Sobic006G086500 Sobic010G013200--Sobic006G086500 Sobic010G013200--Sobic009G201300 Sobic010G013200--Sobic009G074400 Sobic010G013200--Sobic010G147100 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G264100--Sobic003G195000 Sobic009G084000 Sobic009G084000 Sobic010G131900--Sobic009G084000 Sobic010G131900--Sobic002G311100 Sobic010G131900--Sobic010G074300 Sobic002G263600 Sobic002G263600 Sobic010G131900--Sobic002G263600 Sobic010G131900--Sobic010G147100 Sobic003G365300 Sobic003G365300 Sobic010G131900--Sobic003G365300 Sobic010G131900--Sobic009G068500 Sobic010G131900--Sobic003G264100 Sobic001G203900 Sobic001G203900 Sobic010G131900--Sobic001G203900 Sobic010G074300--Sobic010G147100 Sobic004G118200 Sobic004G118200 Sobic010G074300--Sobic004G118200 Sobic007G190000 Sobic007G190000 Sobic010G074300--Sobic007G190000 Sobic001G080700 Sobic001G080700 Sobic010G074300--Sobic001G080700 Sobic010G074300--Sobic002G311100 Sobic010G074300--Sobic010G131900 Sobic010G074300--Sobic009G074400 Sobic010G074300--Sobic003G316500 Sobic010G074300--Sobic001G268200 Sobic009G143700--Sobic002G311100 Sobic009G143700--Sobic001G333100 Sobic009G143700--Sobic009G109925 Sobic010G004100 Sobic010G004100 Sobic009G143700--Sobic010G004100 Sobic003G110000 Sobic003G110000 Sobic009G143700--Sobic003G110000 Sobic009G139900 Sobic009G139900 Sobic009G143700--Sobic009G139900 Sobic009G143700--Sobic003G264100 Sobic007G054800 Sobic007G054800 Sobic009G143700--Sobic007G054800 Sobic003G194100 Sobic003G194100 Sobic009G143700--Sobic003G194100 Sobic009G201300--Sobic006G219600 Sobic009G201300--Sobic003G155100 Sobic006G050700 Sobic006G050700 Sobic009G201300--Sobic006G050700 Sobic003G119600 Sobic003G119600 Sobic009G201300--Sobic003G119600 Sobic004G244900 Sobic004G244900 Sobic009G201300--Sobic004G244900 Sobic001G133000 Sobic001G133000 Sobic009G201300--Sobic001G133000 Sobic009G201300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic009G201300--Sobic001G457800 Sobic002G211800 Sobic002G211800 Sobic009G201300--Sobic002G211800 Sobic001G289800 Sobic001G289800 Sobic003G195000--Sobic001G289800 Sobic001G194200 Sobic001G194200 Sobic003G195000--Sobic001G194200 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic002G142900 Sobic002G142900 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic003G195000--Sobic001G192000
Octagon: transcription factors


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