Gene annotation
Transcriptome id Sobic.010G131900.2,Sobic.010G131900.1
Synonym Sb10g012170
Functional annotation Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed
UniProt A0A194YIW9
Pfam PF13639 PF00642
Panther DB PTHR11224 PTHR11224:SF10
NCBI CDD KOG1039; Predicted E3 ubiquitin ligase
KEGG Orthology K15687; E3 ubiquitin-protein ligase makorin
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G08505 : zinc finger (CCCH-type/C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os06g21390.2 : Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050610 , Zm00025a050626
Brachypodium KQK18475 , KQK18474
Barley HORVU7Hr1G046080.22 , HORVU7Hr1G046080.20 , HORVU7Hr1G046080.21 , HORVU7Hr1G046080.17 , HORVU7Hr1G046080.16 , HORVU7Hr1G046080.15 , HORVU7Hr1G046080.14 , HORVU7Hr1G046080.13 , HORVU7Hr1G046080.11 , HORVU7Hr1G046080.10 , HORVU7Hr1G046080.19 , HORVU7Hr1G046080.18 , HORVU7Hr1G046080.12 , HORVU7Hr1G046080.7 , HORVU7Hr1G046080.6 , HORVU7Hr1G046080.5 , HORVU7Hr1G046080.4 , HORVU7Hr1G046080.2 , HORVU7Hr1G046080.1 , HORVU7Hr1G046080.9 , HORVU7Hr1G046080.8
Wheat TraesCS7D02G226400 , TraesCS7B02G191500 , TraesCS7A02G228200
Populus -


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cDNA sequences
Sobic.010G131900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
2 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.010G074300 smr domain containing protein, expressed -
4 Sobic.002G263600 expressed protein -
5 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
6 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
7 Sobic.009G068500 expressed protein -
8 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
9 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
10 Sobic.003G006300 expressed protein -
11 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
12 Sobic.003G139800 protein kinase, putative, expressed K13436: pto-interacting protein 1
13 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
14 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
15 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
16 Sobic.004G054100 protein-O-fucosyltransferase 1, putative, expressed -
17 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
18 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
19 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase


Gene co-expression network
sample Sobic010G131900 Sobic010G131900 Sobic009G084000 Sobic009G084000 Sobic010G131900--Sobic009G084000 Sobic002G311100 Sobic002G311100 Sobic010G131900--Sobic002G311100 Sobic010G074300 Sobic010G074300 Sobic010G131900--Sobic010G074300 Sobic002G263600 Sobic002G263600 Sobic010G131900--Sobic002G263600 Sobic010G147100 Sobic010G147100 Sobic010G131900--Sobic010G147100 Sobic003G365300 Sobic003G365300 Sobic010G131900--Sobic003G365300 Sobic009G068500 Sobic009G068500 Sobic010G131900--Sobic009G068500 Sobic003G264100 Sobic003G264100 Sobic010G131900--Sobic003G264100 Sobic001G203900 Sobic001G203900 Sobic010G131900--Sobic001G203900 Sobic003G220800 Sobic003G220800 Sobic009G084000--Sobic003G220800 Sobic009G084000--Sobic010G131900 Sobic001G014800 Sobic001G014800 Sobic009G084000--Sobic001G014800 Sobic004G206700 Sobic004G206700 Sobic009G084000--Sobic004G206700 Sobic004G054100 Sobic004G054100 Sobic009G084000--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic009G084000--Sobic002G047700 Sobic009G084000--Sobic002G263600 Sobic003G214500 Sobic003G214500 Sobic009G084000--Sobic003G214500 Sobic009G222500 Sobic009G222500 Sobic009G084000--Sobic009G222500 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic002G311100--Sobic003G264100 Sobic002G311100--Sobic010G131900 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic010G074300--Sobic010G147100 Sobic004G118200 Sobic004G118200 Sobic010G074300--Sobic004G118200 Sobic007G190000 Sobic007G190000 Sobic010G074300--Sobic007G190000 Sobic001G080700 Sobic001G080700 Sobic010G074300--Sobic001G080700 Sobic010G074300--Sobic002G311100 Sobic010G074300--Sobic010G131900 Sobic010G074300--Sobic009G074400 Sobic003G316500 Sobic003G316500 Sobic010G074300--Sobic003G316500 Sobic001G268200 Sobic001G268200 Sobic010G074300--Sobic001G268200 Sobic002G142900 Sobic002G142900 Sobic002G263600--Sobic002G142900 Sobic010G020400 Sobic010G020400 Sobic002G263600--Sobic010G020400 Sobic002G263600--Sobic010G131900 Sobic009G075800 Sobic009G075800 Sobic002G263600--Sobic009G075800 Sobic003G046300 Sobic003G046300 Sobic002G263600--Sobic003G046300 Sobic002G263600--Sobic009G222500 Sobic002G263600--Sobic001G014800 Sobic006G196300 Sobic006G196300 Sobic002G263600--Sobic006G196300 Sobic002G008800 Sobic002G008800 Sobic002G263600--Sobic002G008800 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic009G053900 Sobic009G053900 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic003G365300--Sobic001G390800 Sobic006G002000 Sobic006G002000 Sobic003G365300--Sobic006G002000 Sobic006G082400 Sobic006G082400 Sobic003G365300--Sobic006G082400 Sobic004G275700 Sobic004G275700 Sobic003G365300--Sobic004G275700 Sobic002G111000 Sobic002G111000 Sobic003G365300--Sobic002G111000 Sobic003G365300--Sobic001G203900 Sobic003G365300--Sobic009G068500 Sobic003G006300 Sobic003G006300 Sobic003G365300--Sobic003G006300 Sobic001G107600 Sobic001G107600 Sobic003G365300--Sobic001G107600 Sobic001G007000 Sobic001G007000 Sobic009G068500--Sobic001G007000 Sobic001G193300 Sobic001G193300 Sobic009G068500--Sobic001G193300 Sobic009G068500--Sobic003G264100 Sobic007G093800 Sobic007G093800 Sobic009G068500--Sobic007G093800 Sobic009G068500--Sobic003G006300 Sobic009G068500--Sobic003G365300 Sobic002G359400 Sobic002G359400 Sobic009G068500--Sobic002G359400 Sobic009G068500--Sobic010G020400 Sobic010G251000 Sobic010G251000 Sobic009G068500--Sobic010G251000 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic003G264100--Sobic006G196300 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G264100--Sobic003G195000 Sobic001G203900--Sobic003G365300 Sobic001G203900--Sobic010G131900 Sobic002G226900 Sobic002G226900 Sobic001G203900--Sobic002G226900 Sobic001G199100 Sobic001G199100 Sobic001G203900--Sobic001G199100 Sobic008G093000 Sobic008G093000 Sobic001G203900--Sobic008G093000 Sobic003G012200 Sobic003G012200 Sobic001G203900--Sobic003G012200 Sobic001G203900--Sobic003G006300 Sobic001G203900--Sobic004G275700 Sobic001G203900--Sobic009G068500
Octagon: transcription factors


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