Gene annotation
Transcriptome id Sobic.003G006300.1
Synonym Sb03g000740
Functional annotation expressed protein
UniProt A0A1B6Q0N8 , H0I4B0
Pfam PF01417
Panther DB PTHR21514 PTHR21514:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16270 : ENTH/VHS family protein
RAP-DB (Rice) LOC_Os01g13160.1 : expressed protein
MaizeGDB (Corn) Zm00025a035996 , Zm00025a022814
Brachypodium KQK03631 , KQK03437 , KQK03436 , KQK03438 , KQK03629
Barley HORVU3Hr1G031690.1 , HORVU3Hr1G031690.2
Wheat TraesCS3D02G164000 , TraesCS3D02G164000 , TraesCS3D02G164000 , TraesCS3A02G156200 , TraesCS3A02G156200 , TraesCS3A02G156200 , TraesCS3B02G182800 , TraesCS3B02G182800 , TraesCS3B02G182800
Populus -


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cDNA sequences
Sobic.003G006300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G068500 expressed protein -
2 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
3 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
4 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
5 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
6 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
7 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
8 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
9 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
10 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
11 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
12 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
13 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
14 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
15 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
16 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
18 Sobic.001G043100 EMB1745, putative, expressed K18723: nucleoporin GLE1
19 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
20 Sobic.003G164200 cullin, putative, expressed K03347: CUL1, cullin 1


Gene co-expression network
sample Sobic003G006300 Sobic003G006300 Sobic009G068500 Sobic009G068500 Sobic003G006300--Sobic009G068500 Sobic003G365300 Sobic003G365300 Sobic003G006300--Sobic003G365300 Sobic001G263600 Sobic001G263600 Sobic003G006300--Sobic001G263600 Sobic003G195000 Sobic003G195000 Sobic003G006300--Sobic003G195000 Sobic001G007000 Sobic001G007000 Sobic003G006300--Sobic001G007000 Sobic003G264100 Sobic003G264100 Sobic003G006300--Sobic003G264100 Sobic003G404500 Sobic003G404500 Sobic003G006300--Sobic003G404500 Sobic002G359400 Sobic002G359400 Sobic003G006300--Sobic002G359400 Sobic010G131900 Sobic010G131900 Sobic003G006300--Sobic010G131900 Sobic009G068500--Sobic001G007000 Sobic001G193300 Sobic001G193300 Sobic009G068500--Sobic001G193300 Sobic009G068500--Sobic003G264100 Sobic007G093800 Sobic007G093800 Sobic009G068500--Sobic007G093800 Sobic009G068500--Sobic003G006300 Sobic009G068500--Sobic003G365300 Sobic009G068500--Sobic002G359400 Sobic010G020400 Sobic010G020400 Sobic009G068500--Sobic010G020400 Sobic010G251000 Sobic010G251000 Sobic009G068500--Sobic010G251000 Sobic001G390800 Sobic001G390800 Sobic003G365300--Sobic001G390800 Sobic006G002000 Sobic006G002000 Sobic003G365300--Sobic006G002000 Sobic006G082400 Sobic006G082400 Sobic003G365300--Sobic006G082400 Sobic004G275700 Sobic004G275700 Sobic003G365300--Sobic004G275700 Sobic002G111000 Sobic002G111000 Sobic003G365300--Sobic002G111000 Sobic001G203900 Sobic001G203900 Sobic003G365300--Sobic001G203900 Sobic003G365300--Sobic009G068500 Sobic003G365300--Sobic003G006300 Sobic001G107600 Sobic001G107600 Sobic003G365300--Sobic001G107600 Sobic008G088872 Sobic008G088872 Sobic001G263600--Sobic008G088872 Sobic002G429300 Sobic002G429300 Sobic001G263600--Sobic002G429300 Sobic002G142900 Sobic002G142900 Sobic001G263600--Sobic002G142900 Sobic005G062200 Sobic005G062200 Sobic001G263600--Sobic005G062200 Sobic008G098900 Sobic008G098900 Sobic001G263600--Sobic008G098900 Sobic002G042600 Sobic002G042600 Sobic001G263600--Sobic002G042600 Sobic001G273700 Sobic001G273700 Sobic001G263600--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G263600--Sobic003G072200 Sobic009G131300 Sobic009G131300 Sobic001G263600--Sobic009G131300 Sobic001G289800 Sobic001G289800 Sobic003G195000--Sobic001G289800 Sobic001G194200 Sobic001G194200 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic001G007000--Sobic009G068500 Sobic001G007000--Sobic010G251000 Sobic001G392300 Sobic001G392300 Sobic001G007000--Sobic001G392300 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic003G264100--Sobic001G192000 Sobic003G264100--Sobic003G195000 Sobic001G451400 Sobic001G451400 Sobic003G404500--Sobic001G451400 Sobic001G441400 Sobic001G441400 Sobic003G404500--Sobic001G441400 Sobic009G245800 Sobic009G245800 Sobic003G404500--Sobic009G245800 Sobic001G363500 Sobic001G363500 Sobic003G404500--Sobic001G363500 Sobic010G116600 Sobic010G116600 Sobic003G404500--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic003G404500--Sobic007G218000 Sobic004G072100 Sobic004G072100 Sobic003G404500--Sobic004G072100 Sobic009G044800 Sobic009G044800 Sobic003G404500--Sobic009G044800 Sobic010G053800 Sobic010G053800 Sobic003G404500--Sobic010G053800 Sobic002G359400--Sobic001G007000 Sobic002G359400--Sobic001G392300 Sobic010G262000 Sobic010G262000 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic008G004600 Sobic008G004600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic006G103200 Sobic006G103200 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400 Sobic009G084000 Sobic009G084000 Sobic010G131900--Sobic009G084000 Sobic010G131900--Sobic002G311100 Sobic010G074300 Sobic010G074300 Sobic010G131900--Sobic010G074300 Sobic002G263600 Sobic002G263600 Sobic010G131900--Sobic002G263600 Sobic010G147100 Sobic010G147100 Sobic010G131900--Sobic010G147100 Sobic010G131900--Sobic003G365300 Sobic010G131900--Sobic009G068500 Sobic010G131900--Sobic003G264100 Sobic010G131900--Sobic001G203900
Octagon: transcription factors


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