Gene annotation
Transcriptome id Sobic.010G147100.3,Sobic.010G147100.1,Sobic.010G147100.2
Synonym Sb10g019670
Functional annotation VHS and GAT domain containing protein, expressed
UniProt A0A194YJC1 , A0A1W0VT66 , A0A1W0VT62
Pfam PF03127 PF00790 PF03127
Panther DB PTHR13856 PTHR13856:SF88
NCBI CDD KOG1087; Cytosolic sorting protein GGA2/TOM1
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT4G32760 : ENTH/VHS/GAT family protein
RAP-DB (Rice) LOC_Os06g22650.1 : VHS and GAT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050785
Brachypodium KQK18282 , KQK18283 , KQK18284
Barley HORVU7Hr1G081350.8 , HORVU7Hr1G081350.6 , HORVU7Hr1G081350.7 , HORVU7Hr1G081350.4 , HORVU7Hr1G081350.5 , HORVU7Hr1G081350.3 , HORVU7Hr1G081350.1 , HORVU7Hr1G081350.2
Wheat TraesCS7B02G242700 , TraesCS7B02G242700 , TraesCS7D02G338200 , TraesCS7D02G338200 , TraesCS7D02G338200 , TraesCS7A02G341400 , TraesCS7A02G341400
Populus -


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cDNA sequences
Sobic.010G147100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G316500 expressed protein -
2 Sobic.010G278200 expressed protein -
3 Sobic.010G074300 smr domain containing protein, expressed -
4 Sobic.003G313500 MATH domain containing protein, expressed -
5 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
6 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
8 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
10 Sobic.009G191000 MATH domain containing protein, expressed -
11 Sobic.003G372500 DUF803 domain containing, putative, expressed -
12 Sobic.007G075400 expressed protein -
13 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
14 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.003G422500 expressed protein -
16 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
17 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
18 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
20 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G147100 Sobic010G147100 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic009G053900 Sobic009G053900 Sobic010G147100--Sobic009G053900 Sobic001G268200 Sobic001G268200 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic001G534700 Sobic001G534700 Sobic003G316500--Sobic001G534700 Sobic003G316500--Sobic009G053900 Sobic009G074400 Sobic009G074400 Sobic003G316500--Sobic009G074400 Sobic001G389100 Sobic001G389100 Sobic003G316500--Sobic001G389100 Sobic003G316500--Sobic010G147100 Sobic001G365900 Sobic001G365900 Sobic003G316500--Sobic001G365900 Sobic009G165700 Sobic009G165700 Sobic003G316500--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic003G316500--Sobic001G451400 Sobic010G206900 Sobic010G206900 Sobic003G316500--Sobic010G206900 Sobic010G278200--Sobic010G147100 Sobic009G138100 Sobic009G138100 Sobic010G278200--Sobic009G138100 Sobic010G130000 Sobic010G130000 Sobic010G278200--Sobic010G130000 Sobic001G124200 Sobic001G124200 Sobic010G278200--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic010G278200--Sobic003G118200 Sobic010G278200--Sobic003G316500 Sobic008G124900 Sobic008G124900 Sobic010G278200--Sobic008G124900 Sobic010G074300--Sobic010G147100 Sobic004G118200 Sobic004G118200 Sobic010G074300--Sobic004G118200 Sobic007G190000 Sobic007G190000 Sobic010G074300--Sobic007G190000 Sobic001G080700 Sobic001G080700 Sobic010G074300--Sobic001G080700 Sobic010G074300--Sobic002G311100 Sobic010G131900 Sobic010G131900 Sobic010G074300--Sobic010G131900 Sobic010G074300--Sobic009G074400 Sobic010G074300--Sobic003G316500 Sobic010G074300--Sobic001G268200 Sobic009G191000 Sobic009G191000 Sobic003G313500--Sobic009G191000 Sobic003G422500 Sobic003G422500 Sobic003G313500--Sobic003G422500 Sobic002G411600 Sobic002G411600 Sobic003G313500--Sobic002G411600 Sobic001G540400 Sobic001G540400 Sobic003G313500--Sobic001G540400 Sobic004G034900 Sobic004G034900 Sobic003G313500--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic003G313500--Sobic001G289600 Sobic003G313500--Sobic009G053900 Sobic002G008900 Sobic002G008900 Sobic003G313500--Sobic002G008900 Sobic003G313500--Sobic001G365900 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic002G311100--Sobic010G147100 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic002G311100--Sobic003G264100 Sobic002G311100--Sobic010G131900 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic009G053900--Sobic009G191000 Sobic009G053900--Sobic003G118200 Sobic009G053900--Sobic002G008900 Sobic009G053900--Sobic003G422500 Sobic009G053900--Sobic001G365900 Sobic009G053900--Sobic001G289600 Sobic009G053900--Sobic010G206900 Sobic009G053900--Sobic007G075400 Sobic009G053900--Sobic001G540400 Sobic001G268200--Sobic001G390800 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic001G268200--Sobic003G313500 Sobic001G268200--Sobic001G121200 Sobic001G268200--Sobic010G139600 Sobic001G268200--Sobic001G085300 Sobic001G194200 Sobic001G194200 Sobic001G268200--Sobic001G194200 Sobic001G268200--Sobic009G053900 Sobic003G118200--Sobic009G053900 Sobic003G118200--Sobic009G191000 Sobic009G113000 Sobic009G113000 Sobic003G118200--Sobic009G113000 Sobic003G118200--Sobic003G422500 Sobic003G118200--Sobic002G008900 Sobic004G347400 Sobic004G347400 Sobic003G118200--Sobic004G347400 Sobic003G118200--Sobic007G075400 Sobic003G118200--Sobic001G451400 Sobic003G118200--Sobic003G313500
Octagon: transcription factors


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