Gene annotation
Transcriptome id Sobic.001G268200.1
Synonym Sb01g026330
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WP42
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G41350 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os11g18947.2 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017964 , Zm00025a003771
Brachypodium -
Barley -
Wheat TraesCS6D02G383800 , TraesCS6B02G439800 , TraesCS6A02G399600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
2 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
3 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
4 Sobic.003G313500 MATH domain containing protein, expressed -
5 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
7 Sobic.001G085300 phytosulfokine receptor precursor, putative, expressed -
8 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
9 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
10 Sobic.003G247500 expressed protein -
11 Sobic.003G372500 DUF803 domain containing, putative, expressed -
12 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
13 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
14 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
15 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
16 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
17 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
18 Sobic.010G074300 smr domain containing protein, expressed -
19 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
20 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic001G268200 Sobic001G268200 Sobic001G390800 Sobic001G390800 Sobic001G268200--Sobic001G390800 Sobic010G013200 Sobic010G013200 Sobic001G268200--Sobic010G013200 Sobic010G147100 Sobic010G147100 Sobic001G268200--Sobic010G147100 Sobic003G313500 Sobic003G313500 Sobic001G268200--Sobic003G313500 Sobic001G121200 Sobic001G121200 Sobic001G268200--Sobic001G121200 Sobic010G139600 Sobic010G139600 Sobic001G268200--Sobic010G139600 Sobic001G085300 Sobic001G085300 Sobic001G268200--Sobic001G085300 Sobic001G194200 Sobic001G194200 Sobic001G268200--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic001G268200--Sobic009G053900 Sobic001G390800--Sobic001G268200 Sobic001G390800--Sobic001G121200 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic010G013200--Sobic001G268200 Sobic008G081300 Sobic008G081300 Sobic010G013200--Sobic008G081300 Sobic002G311100 Sobic002G311100 Sobic010G013200--Sobic002G311100 Sobic001G049500 Sobic001G049500 Sobic010G013200--Sobic001G049500 Sobic002G294800 Sobic002G294800 Sobic010G013200--Sobic002G294800 Sobic006G086500 Sobic006G086500 Sobic010G013200--Sobic006G086500 Sobic009G201300 Sobic009G201300 Sobic010G013200--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic010G013200--Sobic009G074400 Sobic010G013200--Sobic010G147100 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic009G191000 Sobic009G191000 Sobic003G313500--Sobic009G191000 Sobic003G422500 Sobic003G422500 Sobic003G313500--Sobic003G422500 Sobic002G411600 Sobic002G411600 Sobic003G313500--Sobic002G411600 Sobic001G540400 Sobic001G540400 Sobic003G313500--Sobic001G540400 Sobic004G034900 Sobic004G034900 Sobic003G313500--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic003G313500--Sobic001G289600 Sobic003G313500--Sobic009G053900 Sobic002G008900 Sobic002G008900 Sobic003G313500--Sobic002G008900 Sobic001G365900 Sobic001G365900 Sobic003G313500--Sobic001G365900 Sobic001G121200--Sobic001G390800 Sobic001G121200--Sobic010G205800 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200 Sobic010G139600--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G139600--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic010G139600--Sobic003G205200 Sobic008G098900 Sobic008G098900 Sobic010G139600--Sobic008G098900 Sobic010G139600--Sobic003G313500 Sobic005G001000 Sobic005G001000 Sobic010G139600--Sobic005G001000 Sobic010G139600--Sobic001G194200 Sobic010G139600--Sobic003G422500 Sobic001G370900 Sobic001G370900 Sobic010G139600--Sobic001G370900 Sobic001G085300--Sobic001G390800 Sobic001G085300--Sobic003G313500 Sobic001G117200 Sobic001G117200 Sobic001G085300--Sobic001G117200 Sobic003G110000 Sobic003G110000 Sobic001G085300--Sobic003G110000 Sobic001G085300--Sobic003G422500 Sobic001G415300 Sobic001G415300 Sobic001G085300--Sobic001G415300 Sobic001G085300--Sobic010G139600 Sobic003G196300 Sobic003G196300 Sobic001G085300--Sobic003G196300 Sobic001G085300--Sobic001G268200 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic009G053900--Sobic009G191000 Sobic009G053900--Sobic003G118200 Sobic009G053900--Sobic002G008900 Sobic009G053900--Sobic003G422500 Sobic009G053900--Sobic001G365900 Sobic009G053900--Sobic001G289600 Sobic009G053900--Sobic010G206900 Sobic009G053900--Sobic007G075400 Sobic009G053900--Sobic001G540400
Octagon: transcription factors


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