Gene annotation
Transcriptome id Sobic.010G138000.1
Synonym AT-PHH1, PHH1, ATCRY2, Sb10g013750, CRY2, FHA
Functional annotation FAD binding domain of DNA photolyase domain containing protein, expressed
UniProt C5Z2C5
Pfam PF00875 PF03441
Panther DB PTHR11455 PTHR11455:SF18
NCBI CDD KOG0133; Deoxyribodipyrimidine photolyase/cryptochrome
KEGG Orthology K12119; cryptochrome 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04400 : cryptochrome 2
RAP-DB (Rice) LOC_Os02g41550.3 : FAD binding domain of DNA photolyase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050687
Brachypodium KQK00407
Barley HORVU6Hr1G058740.2 , HORVU6Hr1G058740.3 , HORVU6Hr1G058740.1
Wheat TraesCS6D02G211700 , TraesCS6A02G223700 , TraesCS6A02G223700 , TraesCS6B02G257600 , TraesCS6B02G257600
Populus -


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cDNA sequences
Sobic.010G138000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G175400 - -
2 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
3 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
4 Sobic.004G136300 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
5 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
6 Sobic.001G002000 protein kinase domain containing protein, expressed -
7 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
8 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
10 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
11 Sobic.003G110000 TBC domain containing protein, expressed -
12 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
13 Sobic.006G043600 cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F
14 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
15 Sobic.001G085300 phytosulfokine receptor precursor, putative, expressed -
16 Sobic.004G296400 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
17 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
18 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
19 Sobic.003G247500 expressed protein -
20 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein


Gene co-expression network
sample Sobic010G138000 Sobic010G138000 Sobic010G175400 Sobic010G175400 Sobic010G138000--Sobic010G175400 Sobic001G194200 Sobic001G194200 Sobic010G138000--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic010G138000--Sobic007G103100 Sobic004G136300 Sobic004G136300 Sobic010G138000--Sobic004G136300 Sobic002G276100 Sobic002G276100 Sobic010G138000--Sobic002G276100 Sobic001G002000 Sobic001G002000 Sobic010G138000--Sobic001G002000 Sobic004G291900 Sobic004G291900 Sobic010G138000--Sobic004G291900 Sobic001G268200 Sobic001G268200 Sobic010G138000--Sobic001G268200 Sobic002G275700 Sobic002G275700 Sobic010G138000--Sobic002G275700 Sobic010G175400--Sobic010G138000 Sobic010G175400--Sobic007G103100 Sobic001G375100 Sobic001G375100 Sobic010G175400--Sobic001G375100 Sobic001G373900 Sobic001G373900 Sobic010G175400--Sobic001G373900 Sobic003G186000 Sobic003G186000 Sobic010G175400--Sobic003G186000 Sobic003G247500 Sobic003G247500 Sobic010G175400--Sobic003G247500 Sobic010G175400--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic010G175400--Sobic006G055200 Sobic006G087700 Sobic006G087700 Sobic010G175400--Sobic006G087700 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic002G316600 Sobic002G316600 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic007G103100--Sobic004G291900 Sobic007G103100--Sobic004G276400 Sobic001G527800 Sobic001G527800 Sobic007G103100--Sobic001G527800 Sobic003G205200 Sobic003G205200 Sobic007G103100--Sobic003G205200 Sobic007G103100--Sobic002G275700 Sobic007G103100--Sobic006G055200 Sobic004G136300--Sobic010G138000 Sobic009G139900 Sobic009G139900 Sobic004G136300--Sobic009G139900 Sobic009G133500 Sobic009G133500 Sobic004G136300--Sobic009G133500 Sobic003G164200 Sobic003G164200 Sobic004G136300--Sobic003G164200 Sobic005G096400 Sobic005G096400 Sobic004G136300--Sobic005G096400 Sobic010G139600 Sobic010G139600 Sobic004G136300--Sobic010G139600 Sobic003G233600 Sobic003G233600 Sobic004G136300--Sobic003G233600 Sobic006G041600 Sobic006G041600 Sobic004G136300--Sobic006G041600 Sobic003G155900 Sobic003G155900 Sobic004G136300--Sobic003G155900 Sobic003G381200 Sobic003G381200 Sobic002G276100--Sobic003G381200 Sobic004G026500 Sobic004G026500 Sobic002G276100--Sobic004G026500 Sobic004G181700 Sobic004G181700 Sobic002G276100--Sobic004G181700 Sobic001G159400 Sobic001G159400 Sobic002G276100--Sobic001G159400 Sobic002G276100--Sobic010G138000 Sobic002G168500 Sobic002G168500 Sobic002G276100--Sobic002G168500 Sobic009G193500 Sobic009G193500 Sobic002G276100--Sobic009G193500 Sobic008G172300 Sobic008G172300 Sobic002G276100--Sobic008G172300 Sobic002G276100--Sobic001G268200 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic001G002000--Sobic004G291900 Sobic003G422500 Sobic003G422500 Sobic001G002000--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic001G002000--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G174200 Sobic004G174200 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic001G390800 Sobic001G390800 Sobic001G268200--Sobic001G390800 Sobic010G013200 Sobic010G013200 Sobic001G268200--Sobic010G013200 Sobic010G147100 Sobic010G147100 Sobic001G268200--Sobic010G147100 Sobic003G313500 Sobic003G313500 Sobic001G268200--Sobic003G313500 Sobic001G121200 Sobic001G121200 Sobic001G268200--Sobic001G121200 Sobic001G268200--Sobic010G139600 Sobic001G085300 Sobic001G085300 Sobic001G268200--Sobic001G085300 Sobic001G268200--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic001G268200--Sobic009G053900 Sobic001G192000 Sobic001G192000 Sobic002G275700--Sobic001G192000 Sobic002G275700--Sobic001G194200 Sobic002G275700--Sobic007G103100 Sobic002G275700--Sobic006G041600 Sobic009G255700 Sobic009G255700 Sobic002G275700--Sobic009G255700 Sobic003G195000 Sobic003G195000 Sobic002G275700--Sobic003G195000 Sobic002G275700--Sobic001G289800 Sobic002G275700--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic002G275700--Sobic003G196300
Octagon: transcription factors


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