Gene annotation
Transcriptome id Sobic.006G043600.1
Synonym RD19, Sb06g010850, RD19A
Functional annotation cysteine proteinase 1 precursor, putative, expressed
UniProt A0A1B6PK40
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF380
NCBI CDD KOG1542; Cysteine proteinase Cathepsin F
KEGG Orthology K01373; cathepsin F
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G39090 : Papain family cysteine protease
RAP-DB (Rice) LOC_Os02g27030.1 : cysteine proteinase 1 precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT60847 , PNT60848
Barley HORVU2Hr1G066680.2 , HORVU2Hr1G066680.1
Wheat TraesCS2D02G272400 , TraesCS2A02G273100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G266400 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
2 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
3 Sobic.004G065000 expressed protein -
4 Sobic.009G133500 expressed protein -
5 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
6 Sobic.006G087700 T-complex protein 11, putative, expressed -
7 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.010G001500 AML1, putative, expressed -
9 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
10 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
11 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
12 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
13 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
14 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
15 Sobic.003G322700 expressed protein -
16 Sobic.002G230500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G329400 formin, putative, expressed -
18 Sobic.002G159700 - -
19 Sobic.010G175400 - -
20 Sobic.004G355000 SAC9, putative, expressed -


Gene co-expression network
sample Sobic006G043600 Sobic006G043600 Sobic004G266400 Sobic004G266400 Sobic006G043600--Sobic004G266400 Sobic010G138000 Sobic010G138000 Sobic006G043600--Sobic010G138000 Sobic004G065000 Sobic004G065000 Sobic006G043600--Sobic004G065000 Sobic009G133500 Sobic009G133500 Sobic006G043600--Sobic009G133500 Sobic010G224000 Sobic010G224000 Sobic006G043600--Sobic010G224000 Sobic006G087700 Sobic006G087700 Sobic006G043600--Sobic006G087700 Sobic001G121200 Sobic001G121200 Sobic006G043600--Sobic001G121200 Sobic010G001500 Sobic010G001500 Sobic006G043600--Sobic010G001500 Sobic006G204900 Sobic006G204900 Sobic006G043600--Sobic006G204900 Sobic004G266400--Sobic006G043600 Sobic004G266400--Sobic006G204900 Sobic002G159700 Sobic002G159700 Sobic004G266400--Sobic002G159700 Sobic001G016700 Sobic001G016700 Sobic004G266400--Sobic001G016700 Sobic004G266400--Sobic010G224000 Sobic003G322700 Sobic003G322700 Sobic004G266400--Sobic003G322700 Sobic001G462500 Sobic001G462500 Sobic004G266400--Sobic001G462500 Sobic004G266400--Sobic001G121200 Sobic001G207400 Sobic001G207400 Sobic004G266400--Sobic001G207400 Sobic010G175400 Sobic010G175400 Sobic010G138000--Sobic010G175400 Sobic001G194200 Sobic001G194200 Sobic010G138000--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic010G138000--Sobic007G103100 Sobic004G136300 Sobic004G136300 Sobic010G138000--Sobic004G136300 Sobic002G276100 Sobic002G276100 Sobic010G138000--Sobic002G276100 Sobic001G002000 Sobic001G002000 Sobic010G138000--Sobic001G002000 Sobic004G291900 Sobic004G291900 Sobic010G138000--Sobic004G291900 Sobic001G268200 Sobic001G268200 Sobic010G138000--Sobic001G268200 Sobic002G275700 Sobic002G275700 Sobic010G138000--Sobic002G275700 Sobic007G075400 Sobic007G075400 Sobic004G065000--Sobic007G075400 Sobic004G331100 Sobic004G331100 Sobic004G065000--Sobic004G331100 Sobic004G065000--Sobic009G133500 Sobic007G163100 Sobic007G163100 Sobic004G065000--Sobic007G163100 Sobic007G133700 Sobic007G133700 Sobic004G065000--Sobic007G133700 Sobic010G139600 Sobic010G139600 Sobic004G065000--Sobic010G139600 Sobic001G313700 Sobic001G313700 Sobic004G065000--Sobic001G313700 Sobic001G273700 Sobic001G273700 Sobic004G065000--Sobic001G273700 Sobic001G085300 Sobic001G085300 Sobic004G065000--Sobic001G085300 Sobic009G133500--Sobic004G065000 Sobic009G133500--Sobic006G204900 Sobic009G133500--Sobic010G139600 Sobic002G147600 Sobic002G147600 Sobic009G133500--Sobic002G147600 Sobic009G133500--Sobic004G136300 Sobic008G092600 Sobic008G092600 Sobic009G133500--Sobic008G092600 Sobic004G329400 Sobic004G329400 Sobic009G133500--Sobic004G329400 Sobic007G004500 Sobic007G004500 Sobic009G133500--Sobic007G004500 Sobic009G133500--Sobic007G075400 Sobic010G112000 Sobic010G112000 Sobic010G224000--Sobic010G112000 Sobic009G113000 Sobic009G113000 Sobic010G224000--Sobic009G113000 Sobic001G248300 Sobic001G248300 Sobic010G224000--Sobic001G248300 Sobic009G053900 Sobic009G053900 Sobic010G224000--Sobic009G053900 Sobic010G224000--Sobic010G001500 Sobic010G224000--Sobic007G075400 Sobic010G153700 Sobic010G153700 Sobic010G224000--Sobic010G153700 Sobic010G224000--Sobic001G121200 Sobic004G347400 Sobic004G347400 Sobic010G224000--Sobic004G347400 Sobic006G087700--Sobic007G075400 Sobic006G087700--Sobic003G322700 Sobic006G233500 Sobic006G233500 Sobic006G087700--Sobic006G233500 Sobic006G087700--Sobic010G139600 Sobic003G301900 Sobic003G301900 Sobic006G087700--Sobic003G301900 Sobic003G320700 Sobic003G320700 Sobic006G087700--Sobic003G320700 Sobic006G087700--Sobic006G204900 Sobic002G128200 Sobic002G128200 Sobic006G087700--Sobic002G128200 Sobic006G087700--Sobic006G043600 Sobic001G390800 Sobic001G390800 Sobic001G121200--Sobic001G390800 Sobic010G205800 Sobic010G205800 Sobic001G121200--Sobic010G205800 Sobic001G121200--Sobic001G268200 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic010G147100 Sobic010G147100 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200 Sobic010G001500--Sobic003G322700 Sobic007G024700 Sobic007G024700 Sobic010G001500--Sobic007G024700 Sobic004G355000 Sobic004G355000 Sobic010G001500--Sobic004G355000 Sobic010G001500--Sobic006G204900 Sobic010G001500--Sobic010G224000 Sobic002G419800 Sobic002G419800 Sobic010G001500--Sobic002G419800 Sobic010G001500--Sobic001G207400 Sobic001G178700 Sobic001G178700 Sobic010G001500--Sobic001G178700 Sobic010G001500--Sobic001G146800 Sobic006G204900--Sobic003G322700 Sobic006G204900--Sobic001G207400 Sobic004G269200 Sobic004G269200 Sobic006G204900--Sobic004G269200 Sobic006G204900--Sobic009G133500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic006G204900--Sobic004G355000 Sobic006G204900--Sobic003G320700 Sobic002G430000 Sobic002G430000 Sobic006G204900--Sobic002G430000
Octagon: transcription factors


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