Gene annotation
Transcriptome id Sobic.002G230500.1
Synonym Sb02g026990
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5X2Z3
Pfam -
Panther DB PTHR33874 PTHR33874:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49710 : -
RAP-DB (Rice) LOC_Os02g54080.1 : expressed protein
MaizeGDB (Corn) Zm00025a047316 , Zm00025a014099
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G043600 cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F
2 Sobic.006G053100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
3 Sobic.007G088100 phosphatidylinositol 3-kinase, root isoform, putative, expressed K00914: PIK3C3, phosphatidylinositol 3-kinase
4 Sobic.003G200100 DUF630/DUF632 domains containing protein, putative, expressed -
5 Sobic.004G266400 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
6 Sobic.010G251200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K12447: UDP-sugar pyrophosphorylase
7 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
8 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
9 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
10 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
11 Sobic.009G133500 expressed protein -
12 Sobic.003G317400 Diacylglycerol kinase DGK (Os)(PubMedID : 27208977)@diacylglycerol kinase, putative, expressed K04718: sphingosine kinase
13 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
14 Sobic.003G401200 selenium-binding protein, putative, expressed K17285: methanethiol oxidase
15 Sobic.002G159700 - -
16 Sobic.008G017800 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
17 Sobic.006G240700 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
18 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
19 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.004G065000 expressed protein -


Gene co-expression network
sample Sobic002G230500 Sobic002G230500 Sobic006G043600 Sobic006G043600 Sobic002G230500--Sobic006G043600 Sobic006G053100 Sobic006G053100 Sobic002G230500--Sobic006G053100 Sobic007G088100 Sobic007G088100 Sobic002G230500--Sobic007G088100 Sobic003G200100 Sobic003G200100 Sobic002G230500--Sobic003G200100 Sobic004G266400 Sobic004G266400 Sobic002G230500--Sobic004G266400 Sobic010G251200 Sobic010G251200 Sobic002G230500--Sobic010G251200 Sobic006G204900 Sobic006G204900 Sobic002G230500--Sobic006G204900 Sobic010G224000 Sobic010G224000 Sobic002G230500--Sobic010G224000 Sobic002G270500 Sobic002G270500 Sobic002G230500--Sobic002G270500 Sobic006G043600--Sobic004G266400 Sobic010G138000 Sobic010G138000 Sobic006G043600--Sobic010G138000 Sobic004G065000 Sobic004G065000 Sobic006G043600--Sobic004G065000 Sobic009G133500 Sobic009G133500 Sobic006G043600--Sobic009G133500 Sobic006G043600--Sobic010G224000 Sobic006G087700 Sobic006G087700 Sobic006G043600--Sobic006G087700 Sobic001G121200 Sobic001G121200 Sobic006G043600--Sobic001G121200 Sobic010G001500 Sobic010G001500 Sobic006G043600--Sobic010G001500 Sobic006G043600--Sobic006G204900 Sobic006G053100--Sobic002G230500 Sobic010G130200 Sobic010G130200 Sobic006G053100--Sobic010G130200 Sobic006G083600 Sobic006G083600 Sobic006G053100--Sobic006G083600 Sobic003G401200 Sobic003G401200 Sobic006G053100--Sobic003G401200 Sobic006G053100--Sobic003G200100 Sobic008G017800 Sobic008G017800 Sobic006G053100--Sobic008G017800 Sobic001G111150 Sobic001G111150 Sobic006G053100--Sobic001G111150 Sobic003G317400 Sobic003G317400 Sobic006G053100--Sobic003G317400 Sobic006G240700 Sobic006G240700 Sobic006G053100--Sobic006G240700 Sobic001G273700 Sobic001G273700 Sobic007G088100--Sobic001G273700 Sobic001G375600 Sobic001G375600 Sobic007G088100--Sobic001G375600 Sobic007G172200 Sobic007G172200 Sobic007G088100--Sobic007G172200 Sobic003G259100 Sobic003G259100 Sobic007G088100--Sobic003G259100 Sobic007G088100--Sobic004G065000 Sobic006G037700 Sobic006G037700 Sobic007G088100--Sobic006G037700 Sobic006G126500 Sobic006G126500 Sobic007G088100--Sobic006G126500 Sobic010G072800 Sobic010G072800 Sobic007G088100--Sobic010G072800 Sobic007G088100--Sobic006G204900 Sobic003G200100--Sobic004G065000 Sobic003G200100--Sobic010G001500 Sobic004G265800 Sobic004G265800 Sobic003G200100--Sobic004G265800 Sobic003G200100--Sobic009G133500 Sobic003G200100--Sobic001G111150 Sobic003G200100--Sobic010G130200 Sobic003G200100--Sobic006G204900 Sobic002G415900 Sobic002G415900 Sobic003G200100--Sobic002G415900 Sobic001G436900 Sobic001G436900 Sobic003G200100--Sobic001G436900 Sobic004G266400--Sobic006G043600 Sobic004G266400--Sobic006G204900 Sobic002G159700 Sobic002G159700 Sobic004G266400--Sobic002G159700 Sobic001G016700 Sobic001G016700 Sobic004G266400--Sobic001G016700 Sobic004G266400--Sobic010G224000 Sobic003G322700 Sobic003G322700 Sobic004G266400--Sobic003G322700 Sobic001G462500 Sobic001G462500 Sobic004G266400--Sobic001G462500 Sobic004G266400--Sobic001G121200 Sobic001G207400 Sobic001G207400 Sobic004G266400--Sobic001G207400 Sobic003G100800 Sobic003G100800 Sobic010G251200--Sobic003G100800 Sobic009G094300 Sobic009G094300 Sobic010G251200--Sobic009G094300 Sobic001G474500 Sobic001G474500 Sobic010G251200--Sobic001G474500 Sobic010G251200--Sobic003G259100 Sobic010G251200--Sobic006G037700 Sobic004G052900 Sobic004G052900 Sobic010G251200--Sobic004G052900 Sobic009G057300 Sobic009G057300 Sobic010G251200--Sobic009G057300 Sobic001G248300 Sobic001G248300 Sobic010G251200--Sobic001G248300 Sobic010G251200--Sobic007G088100 Sobic006G204900--Sobic003G322700 Sobic006G204900--Sobic001G207400 Sobic004G269200 Sobic004G269200 Sobic006G204900--Sobic004G269200 Sobic006G204900--Sobic009G133500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic004G355000 Sobic004G355000 Sobic006G204900--Sobic004G355000 Sobic003G320700 Sobic003G320700 Sobic006G204900--Sobic003G320700 Sobic002G430000 Sobic002G430000 Sobic006G204900--Sobic002G430000 Sobic010G112000 Sobic010G112000 Sobic010G224000--Sobic010G112000 Sobic009G113000 Sobic009G113000 Sobic010G224000--Sobic009G113000 Sobic010G224000--Sobic001G248300 Sobic009G053900 Sobic009G053900 Sobic010G224000--Sobic009G053900 Sobic010G224000--Sobic010G001500 Sobic007G075400 Sobic007G075400 Sobic010G224000--Sobic007G075400 Sobic010G153700 Sobic010G153700 Sobic010G224000--Sobic010G153700 Sobic010G224000--Sobic001G121200 Sobic004G347400 Sobic004G347400 Sobic010G224000--Sobic004G347400 Sobic007G024700 Sobic007G024700 Sobic002G270500--Sobic007G024700 Sobic002G270500--Sobic001G207400 Sobic002G270500--Sobic004G355000 Sobic005G157000 Sobic005G157000 Sobic002G270500--Sobic005G157000 Sobic002G270500--Sobic002G430000 Sobic009G126900 Sobic009G126900 Sobic002G270500--Sobic009G126900 Sobic002G270500--Sobic009G094300 Sobic004G113400 Sobic004G113400 Sobic002G270500--Sobic004G113400 Sobic002G270500--Sobic004G269200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.