Gene annotation
Transcriptome id Sobic.006G053100.1
Synonym YSL6, Sb06g013960
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
-
UniProt C5YET8
Pfam PF03169
Panther DB PTHR31645
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G27020 : YELLOW STRIPE like 6
RAP-DB (Rice) LOC_Os04g32050.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a011749
Brachypodium KQJ82291 , KQJ82293 , KQJ82292
Barley HORVU2Hr1G090380.8 , HORVU2Hr1G090380.2 , HORVU2Hr1G090380.3 , HORVU2Hr1G090380.1 , HORVU2Hr1G090380.7 , HORVU2Hr1G090380.4 , HORVU2Hr1G090380.5 , HORVU2Hr1G070300.2 , HORVU2Hr1G070300.1 , HORVU2Hr1G090380.6 , HORVU0Hr1G017010.1
Wheat TraesCS2D02G283400 , TraesCS2D02G484200 , TraesCS2D02G484200 , TraesCS2A02G484200 , TraesCS2A02G484200 , TraesCS6A02G220900 , TraesCS2B02G097600 , TraesCS2A02G284700 , TraesCS2B02G510300 , TraesCS2B02G301800 , TraesCS2D02G081000 , TraesCS2D02G081200 , TraesCS2D02G081200 , TraesCS2A02G083400 , TraesCS2B02G097400 , TraesCS2B02G097400
Populus -


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cDNA sequences
Sobic.006G053100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G230500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
3 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA
4 Sobic.003G401200 selenium-binding protein, putative, expressed K17285: methanethiol oxidase
5 Sobic.003G200100 DUF630/DUF632 domains containing protein, putative, expressed -
6 Sobic.008G017800 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
7 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
8 Sobic.003G317400 Diacylglycerol kinase DGK (Os)(PubMedID : 27208977)@diacylglycerol kinase, putative, expressed K04718: sphingosine kinase
9 Sobic.006G240700 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
10 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
11 Sobic.010G251200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K12447: UDP-sugar pyrophosphorylase
12 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
13 Sobic.006G043600 cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F
14 Sobic.010G264200 UPF0183 protein, putative, expressed -
15 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
16 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.008G147700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K14169: CTU2, cytoplasmic tRNA 2-thiolation protein 2
18 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
19 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
20 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17


Gene co-expression network
sample Sobic006G053100 Sobic006G053100 Sobic002G230500 Sobic002G230500 Sobic006G053100--Sobic002G230500 Sobic010G130200 Sobic010G130200 Sobic006G053100--Sobic010G130200 Sobic006G083600 Sobic006G083600 Sobic006G053100--Sobic006G083600 Sobic003G401200 Sobic003G401200 Sobic006G053100--Sobic003G401200 Sobic003G200100 Sobic003G200100 Sobic006G053100--Sobic003G200100 Sobic008G017800 Sobic008G017800 Sobic006G053100--Sobic008G017800 Sobic001G111150 Sobic001G111150 Sobic006G053100--Sobic001G111150 Sobic003G317400 Sobic003G317400 Sobic006G053100--Sobic003G317400 Sobic006G240700 Sobic006G240700 Sobic006G053100--Sobic006G240700 Sobic006G043600 Sobic006G043600 Sobic002G230500--Sobic006G043600 Sobic002G230500--Sobic006G053100 Sobic007G088100 Sobic007G088100 Sobic002G230500--Sobic007G088100 Sobic002G230500--Sobic003G200100 Sobic004G266400 Sobic004G266400 Sobic002G230500--Sobic004G266400 Sobic010G251200 Sobic010G251200 Sobic002G230500--Sobic010G251200 Sobic006G204900 Sobic006G204900 Sobic002G230500--Sobic006G204900 Sobic010G224000 Sobic010G224000 Sobic002G230500--Sobic010G224000 Sobic002G270500 Sobic002G270500 Sobic002G230500--Sobic002G270500 Sobic010G130200--Sobic006G083600 Sobic010G130200--Sobic001G111150 Sobic003G305200 Sobic003G305200 Sobic010G130200--Sobic003G305200 Sobic006G271200 Sobic006G271200 Sobic010G130200--Sobic006G271200 Sobic010G130200--Sobic002G270500 Sobic010G264200 Sobic010G264200 Sobic010G130200--Sobic010G264200 Sobic003G354400 Sobic003G354400 Sobic010G130200--Sobic003G354400 Sobic007G024700 Sobic007G024700 Sobic010G130200--Sobic007G024700 Sobic005G203800 Sobic005G203800 Sobic010G130200--Sobic005G203800 Sobic006G083600--Sobic010G130200 Sobic006G083600--Sobic003G305200 Sobic002G189400 Sobic002G189400 Sobic006G083600--Sobic002G189400 Sobic006G083600--Sobic010G264200 Sobic006G083600--Sobic007G024700 Sobic003G155900 Sobic003G155900 Sobic006G083600--Sobic003G155900 Sobic002G262900 Sobic002G262900 Sobic006G083600--Sobic002G262900 Sobic001G124200 Sobic001G124200 Sobic006G083600--Sobic001G124200 Sobic004G113400 Sobic004G113400 Sobic006G083600--Sobic004G113400 Sobic003G366400 Sobic003G366400 Sobic003G401200--Sobic003G366400 Sobic004G169700 Sobic004G169700 Sobic003G401200--Sobic004G169700 Sobic009G152700 Sobic009G152700 Sobic003G401200--Sobic009G152700 Sobic008G062200 Sobic008G062200 Sobic003G401200--Sobic008G062200 Sobic003G219600 Sobic003G219600 Sobic003G401200--Sobic003G219600 Sobic001G227800 Sobic001G227800 Sobic003G401200--Sobic001G227800 Sobic009G211400 Sobic009G211400 Sobic003G401200--Sobic009G211400 Sobic003G329400 Sobic003G329400 Sobic003G401200--Sobic003G329400 Sobic002G215700 Sobic002G215700 Sobic003G401200--Sobic002G215700 Sobic004G065000 Sobic004G065000 Sobic003G200100--Sobic004G065000 Sobic010G001500 Sobic010G001500 Sobic003G200100--Sobic010G001500 Sobic004G265800 Sobic004G265800 Sobic003G200100--Sobic004G265800 Sobic009G133500 Sobic009G133500 Sobic003G200100--Sobic009G133500 Sobic003G200100--Sobic001G111150 Sobic003G200100--Sobic010G130200 Sobic003G200100--Sobic006G204900 Sobic002G415900 Sobic002G415900 Sobic003G200100--Sobic002G415900 Sobic001G436900 Sobic001G436900 Sobic003G200100--Sobic001G436900 Sobic007G068100 Sobic007G068100 Sobic008G017800--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic008G017800--Sobic001G325200 Sobic008G017800--Sobic003G329400 Sobic003G148800 Sobic003G148800 Sobic008G017800--Sobic003G148800 Sobic001G474500 Sobic001G474500 Sobic008G017800--Sobic001G474500 Sobic008G017800--Sobic009G211400 Sobic008G017800--Sobic003G366400 Sobic007G219900 Sobic007G219900 Sobic008G017800--Sobic007G219900 Sobic009G057300 Sobic009G057300 Sobic008G017800--Sobic009G057300 Sobic001G111150--Sobic010G130200 Sobic001G111150--Sobic007G068100 Sobic001G111150--Sobic009G057300 Sobic001G111150--Sobic003G354400 Sobic001G111150--Sobic010G001500 Sobic003G388251 Sobic003G388251 Sobic001G111150--Sobic003G388251 Sobic001G111150--Sobic001G474500 Sobic004G127700 Sobic004G127700 Sobic001G111150--Sobic004G127700 Sobic004G124200 Sobic004G124200 Sobic001G111150--Sobic004G124200 Sobic003G317400--Sobic009G211400 Sobic002G352800 Sobic002G352800 Sobic003G317400--Sobic002G352800 Sobic010G043400 Sobic010G043400 Sobic003G317400--Sobic010G043400 Sobic003G317400--Sobic004G124200 Sobic003G317400--Sobic009G133500 Sobic003G317400--Sobic001G111150 Sobic003G317400--Sobic008G017800 Sobic003G317400--Sobic010G130200 Sobic002G215800 Sobic002G215800 Sobic003G317400--Sobic002G215800 Sobic006G240700--Sobic003G305200 Sobic006G240700--Sobic001G111150 Sobic006G240700--Sobic003G200100 Sobic001G130000 Sobic001G130000 Sobic006G240700--Sobic001G130000 Sobic006G240700--Sobic007G024700 Sobic008G177200 Sobic008G177200 Sobic006G240700--Sobic008G177200 Sobic003G100800 Sobic003G100800 Sobic006G240700--Sobic003G100800 Sobic006G240700--Sobic010G001500 Sobic006G240700--Sobic001G474500
Octagon: transcription factors


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