Gene annotation
Transcriptome id Sobic.010G251200.2,Sobic.010G251200.1,Sobic.010G251200.3
Synonym USP, UDPGP, ATUSP
Functional annotation UDP-glucose Pyrophosphorylase (PubMedID : 26616172)
UTP--glucose-1-phosphate uridylyltransferase, putative, expressed
UniProt A0A194YLE3 , A0A194YME5 , A0A194YLE9
Pfam PF01704
Panther DB PTHR11952 PTHR11952:SF9
NCBI CDD KOG2388; UDP-N-acetylglucosamine pyrophosphorylase
KEGG Orthology K12447; UDP-sugar pyrophosphorylase
Gene Ontology GO:0008152; metabolic process


Orthologs (automatic annotation)
TAIR AT5G52560 : UDP-sugar pyrophosphorylase
RAP-DB (Rice) LOC_Os06g48760.1 : UTP--glucose-1-phosphate uridylyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a018361 , Zm00025a041775 , Zm00025a043334
Brachypodium KQK17397
Barley HORVU3Hr1G081530.33 , HORVU3Hr1G081530.39 , HORVU3Hr1G081530.42 , HORVU3Hr1G081530.7 , HORVU3Hr1G064410.18 , HORVU3Hr1G064410.19 , HORVU3Hr1G064410.12 , HORVU3Hr1G064410.13 , HORVU3Hr1G064410.10 , HORVU3Hr1G064410.11 , HORVU3Hr1G064410.16 , HORVU3Hr1G064410.17 , HORVU3Hr1G064410.14 , HORVU3Hr1G064410.15 , HORVU3Hr1G058350.35 , HORVU3Hr1G058350.37 , HORVU3Hr1G081530.30 , HORVU3Hr1G081530.2 , HORVU3Hr1G081530.31 , HORVU3Hr1G081530.27 , HORVU3Hr1G081530.21 , HORVU3Hr1G081530.36 , HORVU3Hr1G081530.37 , HORVU3Hr1G081530.28 , HORVU3Hr1G081530.34 , HORVU3Hr1G081530.25 , HORVU3Hr1G081530.24 , HORVU3Hr1G058350.60 , HORVU3Hr1G058350.65 , HORVU7Hr1G097020.13 , HORVU7Hr1G097020.11 , HORVU3Hr1G081530.26 , HORVU7Hr1G097020.16 , HORVU7Hr1G097020.15 , HORVU7Hr1G097020.14 , HORVU3Hr1G081530.35 , HORVU5Hr1G046750.1 , HORVU3Hr1G081530.22 , HORVU5Hr1G046750.3 , HORVU3Hr1G081530.29 , HORVU5Hr1G046750.2 , HORVU3Hr1G081530.18 , HORVU3Hr1G081530.19 , HORVU3Hr1G081530.11 , HORVU3Hr1G081530.12 , HORVU3Hr1G081530.13 , HORVU3Hr1G081530.14 , HORVU3Hr1G081530.15 , HORVU3Hr1G081530.16 , HORVU3Hr1G081530.17 , HORVU3Hr1G081530.3 , HORVU3Hr1G081530.8 , HORVU3Hr1G081530.9 , HORVU3Hr1G081530.1 , HORVU3Hr1G081530.6 , HORVU3Hr1G081530.32 , HORVU3Hr1G081530.10 , HORVU3Hr1G058350.45 , HORVU3Hr1G058350.44 , HORVU3Hr1G058350.47 , HORVU3Hr1G058350.46 , HORVU3Hr1G058350.41 , HORVU3Hr1G081530.20 , HORVU3Hr1G058350.43 , HORVU3Hr1G058350.42 , HORVU3Hr1G064410.41 , HORVU3Hr1G064410.40 , HORVU3Hr1G064410.43 , HORVU3Hr1G064410.42 , HORVU3Hr1G064410.45 , HORVU3Hr1G064410.44 , HORVU3Hr1G064410.47 , HORVU3Hr1G064410.46 , HORVU3Hr1G064410.49 , HORVU3Hr1G064410.48 , HORVU3Hr1G064410.34 , HORVU3Hr1G064410.23 , HORVU3Hr1G064410.22 , HORVU3Hr1G064410.21 , HORVU3Hr1G064410.20 , HORVU3Hr1G064410.27 , HORVU3Hr1G064410.26 , HORVU3Hr1G064410.25 , HORVU3Hr1G064410.24 , HORVU3Hr1G081530.43 , HORVU3Hr1G064410.29 , HORVU3Hr1G064410.28 , HORVU3Hr1G064410.30 , HORVU3Hr1G081530.41 , HORVU3Hr1G064410.50 , HORVU3Hr1G064410.31 , HORVU3Hr1G081530.40 , HORVU3Hr1G064410.32 , HORVU3Hr1G064410.35 , HORVU3Hr1G064410.36 , HORVU3Hr1G064410.37 , HORVU7Hr1G097020.3 , HORVU7Hr1G097020.2 , HORVU7Hr1G097020.1 , HORVU3Hr1G064410.33 , HORVU7Hr1G097020.7 , HORVU7Hr1G097020.6 , HORVU7Hr1G097020.5 , HORVU7Hr1G097020.4 , HORVU3Hr1G064410.38 , HORVU3Hr1G064410.39 , HORVU7Hr1G097020.9 , HORVU7Hr1G097020.8 , HORVU3Hr1G081530.38 , HORVU3Hr1G058350.59 , HORVU3Hr1G058350.18 , HORVU3Hr1G064410.1 , HORVU3Hr1G064410.2 , HORVU3Hr1G064410.3 , HORVU3Hr1G064410.4 , HORVU3Hr1G064410.5 , HORVU3Hr1G064410.6 , HORVU3Hr1G064410.7 , HORVU3Hr1G064410.8 , HORVU3Hr1G064410.9 , HORVU3Hr1G081530.4 , HORVU3Hr1G081530.23 , HORVU3Hr1G081530.44 , HORVU3Hr1G058350.6 , HORVU3Hr1G058350.54 , HORVU3Hr1G058350.21 , HORVU3Hr1G081530.5
Wheat TraesCS7B02G319900 , TraesCS7B02G319900 , TraesCS7D02G412100 , TraesCS7A02G419300
Populus PNT48403


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cDNA sequences
Sobic.010G251200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
2 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
3 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
4 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
5 Sobic.006G037700 phosphoribulokinase/Uridine kinase family protein, expressed -
6 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
7 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
9 Sobic.007G088100 phosphatidylinositol 3-kinase, root isoform, putative, expressed K00914: PIK3C3, phosphatidylinositol 3-kinase
10 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
11 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
12 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
13 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
14 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
15 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
16 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
17 Sobic.008G070500 GTP binding protein, putative, expressed -
18 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
19 Sobic.004G355000 SAC9, putative, expressed -
20 Sobic.002G270500 UBX domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G251200 Sobic010G251200 Sobic003G100800 Sobic003G100800 Sobic010G251200--Sobic003G100800 Sobic009G094300 Sobic009G094300 Sobic010G251200--Sobic009G094300 Sobic001G474500 Sobic001G474500 Sobic010G251200--Sobic001G474500 Sobic003G259100 Sobic003G259100 Sobic010G251200--Sobic003G259100 Sobic006G037700 Sobic006G037700 Sobic010G251200--Sobic006G037700 Sobic004G052900 Sobic004G052900 Sobic010G251200--Sobic004G052900 Sobic009G057300 Sobic009G057300 Sobic010G251200--Sobic009G057300 Sobic001G248300 Sobic001G248300 Sobic010G251200--Sobic001G248300 Sobic007G088100 Sobic007G088100 Sobic010G251200--Sobic007G088100 Sobic003G100800--Sobic004G052900 Sobic007G172400 Sobic007G172400 Sobic003G100800--Sobic007G172400 Sobic003G109100 Sobic003G109100 Sobic003G100800--Sobic003G109100 Sobic007G024700 Sobic007G024700 Sobic003G100800--Sobic007G024700 Sobic004G329400 Sobic004G329400 Sobic003G100800--Sobic004G329400 Sobic003G100800--Sobic001G248300 Sobic001G178700 Sobic001G178700 Sobic003G100800--Sobic001G178700 Sobic003G100800--Sobic010G251200 Sobic004G113400 Sobic004G113400 Sobic003G100800--Sobic004G113400 Sobic009G094300--Sobic007G024700 Sobic009G094300--Sobic004G113400 Sobic002G270500 Sobic002G270500 Sobic009G094300--Sobic002G270500 Sobic009G094300--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic009G094300--Sobic005G157000 Sobic009G094300--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic009G094300--Sobic001G270400 Sobic009G094300--Sobic001G248300 Sobic001G207400 Sobic001G207400 Sobic009G094300--Sobic001G207400 Sobic007G068100 Sobic007G068100 Sobic001G474500--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic003G388251 Sobic003G388251 Sobic001G474500--Sobic003G388251 Sobic004G321800 Sobic004G321800 Sobic001G474500--Sobic004G321800 Sobic003G428400 Sobic003G428400 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic009G034700 Sobic009G034700 Sobic001G474500--Sobic009G034700 Sobic003G259100--Sobic004G113400 Sobic008G099800 Sobic008G099800 Sobic003G259100--Sobic008G099800 Sobic001G050600 Sobic001G050600 Sobic003G259100--Sobic001G050600 Sobic003G072200 Sobic003G072200 Sobic003G259100--Sobic003G072200 Sobic001G273700 Sobic001G273700 Sobic003G259100--Sobic001G273700 Sobic001G058700 Sobic001G058700 Sobic003G259100--Sobic001G058700 Sobic001G347500 Sobic001G347500 Sobic003G259100--Sobic001G347500 Sobic001G219900 Sobic001G219900 Sobic003G259100--Sobic001G219900 Sobic010G034000 Sobic010G034000 Sobic003G259100--Sobic010G034000 Sobic004G051200 Sobic004G051200 Sobic006G037700--Sobic004G051200 Sobic001G065000 Sobic001G065000 Sobic006G037700--Sobic001G065000 Sobic006G037700--Sobic008G099800 Sobic006G037700--Sobic003G072200 Sobic007G098500 Sobic007G098500 Sobic006G037700--Sobic007G098500 Sobic006G035300 Sobic006G035300 Sobic006G037700--Sobic006G035300 Sobic006G037700--Sobic001G050600 Sobic006G037700--Sobic003G259100 Sobic006G037700--Sobic001G058700 Sobic004G052900--Sobic003G109100 Sobic004G052900--Sobic007G024700 Sobic004G052900--Sobic003G100800 Sobic004G052900--Sobic007G172400 Sobic002G340100 Sobic002G340100 Sobic004G052900--Sobic002G340100 Sobic002G419800 Sobic002G419800 Sobic004G052900--Sobic002G419800 Sobic006G245400 Sobic006G245400 Sobic004G052900--Sobic006G245400 Sobic004G052900--Sobic001G248300 Sobic004G052900--Sobic009G094300 Sobic003G061800 Sobic003G061800 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic003G354400 Sobic003G354400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic004G355000 Sobic004G355000 Sobic001G248300--Sobic004G355000 Sobic002G169900 Sobic002G169900 Sobic001G248300--Sobic002G169900 Sobic001G248300--Sobic001G178700 Sobic001G248300--Sobic004G052900 Sobic005G001000 Sobic005G001000 Sobic001G248300--Sobic005G001000 Sobic001G248300--Sobic009G094300 Sobic010G112000 Sobic010G112000 Sobic001G248300--Sobic010G112000 Sobic001G248300--Sobic004G329400 Sobic001G248300--Sobic004G113400 Sobic007G088100--Sobic001G273700 Sobic001G375600 Sobic001G375600 Sobic007G088100--Sobic001G375600 Sobic007G172200 Sobic007G172200 Sobic007G088100--Sobic007G172200 Sobic007G088100--Sobic003G259100 Sobic004G065000 Sobic004G065000 Sobic007G088100--Sobic004G065000 Sobic007G088100--Sobic006G037700 Sobic006G126500 Sobic006G126500 Sobic007G088100--Sobic006G126500 Sobic010G072800 Sobic010G072800 Sobic007G088100--Sobic010G072800 Sobic006G204900 Sobic006G204900 Sobic007G088100--Sobic006G204900
Octagon: transcription factors


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