Gene annotation
Transcriptome id Sobic.001G438600.1
Synonym Sb01g041240
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
dihydrodipicolinate reductase, putative, expressed
UniProt C5WQZ8
Pfam PF01113 PF05173
Panther DB PTHR20836 PTHR20836:SF3
NCBI CDD -
KEGG Orthology K00215; 4-hydroxy-tetrahydrodipicolinate reductase
Gene Ontology GO:0009089; lysine biosynthetic process via diaminopimelate GO:00088394-hydroxy-tetrahydrodipicolinate reductase


Orthologs (automatic annotation)
TAIR AT3G59890 : Dihydrodipicolinate reductase, bacterial/plant
RAP-DB (Rice) LOC_Os03g14120.1 : dihydrodipicolinate reductase, putative, expressed
MaizeGDB (Corn) Zm00025a052897
Brachypodium PNT77751 , PNT77752 , KQK22613
Barley HORVU4Hr1G063600.9 , HORVU4Hr1G063600.8 , HORVU4Hr1G063600.7 , HORVU4Hr1G063600.6 , HORVU4Hr1G063600.5 , HORVU4Hr1G063600.4 , HORVU4Hr1G063600.3 , HORVU4Hr1G063600.2 , HORVU4Hr1G063600.1 , HORVU4Hr1G063600.17 , HORVU4Hr1G063600.16 , HORVU4Hr1G063600.15 , HORVU4Hr1G063600.14 , HORVU4Hr1G063600.13 , HORVU4Hr1G063600.11 , HORVU4Hr1G063600.10 , HORVU4Hr1G063600.19 , HORVU4Hr1G063600.18
Wheat TraesCS4D02G226800 , TraesCS4B02G226100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
2 Sobic.004G355000 SAC9, putative, expressed -
3 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
4 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
5 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
6 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
7 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
8 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
9 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
10 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
11 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
12 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
13 Sobic.002G403500 tetratricopeptide-like helical, putative, expressed -
14 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.010G205200 Ser/Thr protein phosphatase family protein, putative, expressed -
16 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
17 Sobic.010G203200 protein kinase domain containing protein, expressed -
18 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
19 Sobic.001G224600 peroxisome assembly protein 12, putative, expressed K13345: PEX12, peroxin-12
20 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G438600 Sobic001G438600 Sobic001G301700 Sobic001G301700 Sobic001G438600--Sobic001G301700 Sobic004G355000 Sobic004G355000 Sobic001G438600--Sobic004G355000 Sobic001G325200 Sobic001G325200 Sobic001G438600--Sobic001G325200 Sobic001G207400 Sobic001G207400 Sobic001G438600--Sobic001G207400 Sobic003G428400 Sobic003G428400 Sobic001G438600--Sobic003G428400 Sobic007G068100 Sobic007G068100 Sobic001G438600--Sobic007G068100 Sobic001G015500 Sobic001G015500 Sobic001G438600--Sobic001G015500 Sobic001G474500 Sobic001G474500 Sobic001G438600--Sobic001G474500 Sobic007G186200 Sobic007G186200 Sobic001G438600--Sobic007G186200 Sobic001G301700--Sobic001G438600 Sobic001G301700--Sobic001G207400 Sobic001G301700--Sobic001G015500 Sobic002G266000 Sobic002G266000 Sobic001G301700--Sobic002G266000 Sobic008G093000 Sobic008G093000 Sobic001G301700--Sobic008G093000 Sobic002G270500 Sobic002G270500 Sobic001G301700--Sobic002G270500 Sobic002G430000 Sobic002G430000 Sobic001G301700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G301700--Sobic002G111000 Sobic010G205200 Sobic010G205200 Sobic001G301700--Sobic010G205200 Sobic004G355000--Sobic001G207400 Sobic004G355000--Sobic002G430000 Sobic001G248300 Sobic001G248300 Sobic004G355000--Sobic001G248300 Sobic005G001000 Sobic005G001000 Sobic004G355000--Sobic005G001000 Sobic004G329400 Sobic004G329400 Sobic004G355000--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic004G355000--Sobic005G157000 Sobic003G322700 Sobic003G322700 Sobic004G355000--Sobic003G322700 Sobic004G113400 Sobic004G113400 Sobic004G355000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G355000--Sobic009G010600 Sobic001G325200--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic001G325200--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G325200--Sobic003G148800 Sobic004G321800 Sobic004G321800 Sobic001G325200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic001G207400--Sobic004G355000 Sobic001G207400--Sobic002G430000 Sobic001G207400--Sobic002G270500 Sobic006G204900 Sobic006G204900 Sobic001G207400--Sobic006G204900 Sobic001G207400--Sobic005G157000 Sobic010G139600 Sobic010G139600 Sobic001G207400--Sobic010G139600 Sobic001G207400--Sobic002G111000 Sobic001G207400--Sobic003G322700 Sobic001G050200 Sobic001G050200 Sobic001G207400--Sobic001G050200 Sobic003G428400--Sobic007G068100 Sobic003G428400--Sobic001G474500 Sobic003G428400--Sobic001G325200 Sobic003G428400--Sobic001G015500 Sobic003G428400--Sobic010G205200 Sobic001G069900 Sobic001G069900 Sobic003G428400--Sobic001G069900 Sobic009G057300 Sobic009G057300 Sobic003G428400--Sobic009G057300 Sobic003G428400--Sobic001G438600 Sobic010G112300 Sobic010G112300 Sobic003G428400--Sobic010G112300 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic006G091700 Sobic006G091700 Sobic001G015500--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic005G178100 Sobic005G178100 Sobic001G015500--Sobic005G178100 Sobic004G124200 Sobic004G124200 Sobic001G015500--Sobic004G124200 Sobic001G150600 Sobic001G150600 Sobic001G015500--Sobic001G150600 Sobic001G015500--Sobic007G186200 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic009G034700 Sobic009G034700 Sobic001G474500--Sobic009G034700 Sobic007G186200--Sobic001G325200 Sobic007G186200--Sobic002G304000 Sobic007G186200--Sobic009G226300 Sobic007G186200--Sobic001G015500 Sobic007G186200--Sobic007G068100 Sobic007G186200--Sobic003G355600 Sobic007G186200--Sobic001G150600 Sobic007G186200--Sobic004G101900 Sobic007G186200--Sobic009G054500
Octagon: transcription factors


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