Gene annotation
Transcriptome id Sobic.002G403500.4,Sobic.002G403500.2,Sobic.002G403500.5,Sobic.002G403500.3
Synonym Sb02g041810
Functional annotation tetratricopeptide-like helical, putative, expressed
UniProt C5X4Q8 , A0A1B6QFZ4
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF37
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34400 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os05g24150.1 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) Zm00025a049033
Brachypodium -
Barley HORVU1Hr1G019670.8 , HORVU1Hr1G019670.9 , HORVU1Hr1G019670.2 , HORVU1Hr1G019670.1 , HORVU1Hr1G019670.6 , HORVU1Hr1G019670.7 , HORVU1Hr1G019670.4 , HORVU1Hr1G019670.5 , HORVU1Hr1G019670.10 , HORVU1Hr1G019670.12 , HORVU1Hr1G019670.13 , HORVU1Hr1G019670.11
Wheat TraesCS1A02G109700 , TraesCS1B02G109200 , TraesCS1D02G091400 , TraesCS7A02G328200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
2 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
3 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
4 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
5 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
6 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
7 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
8 Sobic.002G169900 hydrolase, NUDIX family, domain containing protein, expressed -
9 Sobic.004G355000 SAC9, putative, expressed -
10 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
12 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
13 Sobic.008G167800 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
14 Sobic.004G236400 AAA family ATPase, putative, expressed -
15 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
16 Sobic.002G032700 "Photosystem II 10kDa polypeptide, chloroplastic (Precursor)"(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@PSBR -photosystem II subunit R (At)(PubMedID : 27208977)@photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
17 Sobic.007G161800 kinase, pfkB family, putative, expressed -
18 Sobic.004G329400 formin, putative, expressed -
19 Sobic.010G112300 aluminum-activated malate transporter, putative, expressed -
20 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase


Gene co-expression network
sample Sobic002G403500 Sobic002G403500 Sobic001G248300 Sobic001G248300 Sobic002G403500--Sobic001G248300 Sobic004G060900 Sobic004G060900 Sobic002G403500--Sobic004G060900 Sobic003G100800 Sobic003G100800 Sobic002G403500--Sobic003G100800 Sobic001G474500 Sobic001G474500 Sobic002G403500--Sobic001G474500 Sobic001G438600 Sobic001G438600 Sobic002G403500--Sobic001G438600 Sobic001G178700 Sobic001G178700 Sobic002G403500--Sobic001G178700 Sobic009G229800 Sobic009G229800 Sobic002G403500--Sobic009G229800 Sobic002G169900 Sobic002G169900 Sobic002G403500--Sobic002G169900 Sobic004G355000 Sobic004G355000 Sobic002G403500--Sobic004G355000 Sobic001G248300--Sobic004G355000 Sobic001G248300--Sobic002G169900 Sobic001G248300--Sobic001G178700 Sobic004G052900 Sobic004G052900 Sobic001G248300--Sobic004G052900 Sobic005G001000 Sobic005G001000 Sobic001G248300--Sobic005G001000 Sobic009G094300 Sobic009G094300 Sobic001G248300--Sobic009G094300 Sobic010G112000 Sobic010G112000 Sobic001G248300--Sobic010G112000 Sobic004G329400 Sobic004G329400 Sobic001G248300--Sobic004G329400 Sobic004G113400 Sobic004G113400 Sobic001G248300--Sobic004G113400 Sobic004G060900--Sobic001G474500 Sobic004G321800 Sobic004G321800 Sobic004G060900--Sobic004G321800 Sobic007G068100 Sobic007G068100 Sobic004G060900--Sobic007G068100 Sobic003G148800 Sobic003G148800 Sobic004G060900--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic004G060900--Sobic001G325200 Sobic002G324000 Sobic002G324000 Sobic004G060900--Sobic002G324000 Sobic004G060900--Sobic009G229800 Sobic003G428400 Sobic003G428400 Sobic004G060900--Sobic003G428400 Sobic009G057300 Sobic009G057300 Sobic004G060900--Sobic009G057300 Sobic003G100800--Sobic004G052900 Sobic007G172400 Sobic007G172400 Sobic003G100800--Sobic007G172400 Sobic003G109100 Sobic003G109100 Sobic003G100800--Sobic003G109100 Sobic007G024700 Sobic007G024700 Sobic003G100800--Sobic007G024700 Sobic003G100800--Sobic004G329400 Sobic003G100800--Sobic001G248300 Sobic003G100800--Sobic001G178700 Sobic010G251200 Sobic010G251200 Sobic003G100800--Sobic010G251200 Sobic003G100800--Sobic004G113400 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic001G474500--Sobic004G060900 Sobic003G388251 Sobic003G388251 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic009G034700 Sobic009G034700 Sobic001G474500--Sobic009G034700 Sobic001G301700 Sobic001G301700 Sobic001G438600--Sobic001G301700 Sobic001G438600--Sobic004G355000 Sobic001G438600--Sobic001G325200 Sobic001G207400 Sobic001G207400 Sobic001G438600--Sobic001G207400 Sobic001G438600--Sobic003G428400 Sobic001G438600--Sobic007G068100 Sobic001G015500 Sobic001G015500 Sobic001G438600--Sobic001G015500 Sobic001G438600--Sobic001G474500 Sobic007G186200 Sobic007G186200 Sobic001G438600--Sobic007G186200 Sobic001G178700--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic001G178700--Sobic009G010600 Sobic001G178700--Sobic001G248300 Sobic001G291000 Sobic001G291000 Sobic001G178700--Sobic001G291000 Sobic001G474600 Sobic001G474600 Sobic001G178700--Sobic001G474600 Sobic001G146800 Sobic001G146800 Sobic001G178700--Sobic001G146800 Sobic001G178700--Sobic010G112000 Sobic001G178700--Sobic007G172400 Sobic001G178700--Sobic004G329400 Sobic003G407300 Sobic003G407300 Sobic009G229800--Sobic003G407300 Sobic001G156100 Sobic001G156100 Sobic009G229800--Sobic001G156100 Sobic009G229800--Sobic004G060900 Sobic001G373200 Sobic001G373200 Sobic009G229800--Sobic001G373200 Sobic009G121100 Sobic009G121100 Sobic009G229800--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic009G229800--Sobic001G443900 Sobic002G419800 Sobic002G419800 Sobic009G229800--Sobic002G419800 Sobic009G229800--Sobic009G057300 Sobic009G229800--Sobic007G172400 Sobic002G169900--Sobic001G248300 Sobic010G138000 Sobic010G138000 Sobic002G169900--Sobic010G138000 Sobic007G193700 Sobic007G193700 Sobic002G169900--Sobic007G193700 Sobic010G175500 Sobic010G175500 Sobic002G169900--Sobic010G175500 Sobic001G327800 Sobic001G327800 Sobic002G169900--Sobic001G327800 Sobic007G116200 Sobic007G116200 Sobic002G169900--Sobic007G116200 Sobic006G055200 Sobic006G055200 Sobic002G169900--Sobic006G055200 Sobic010G175400 Sobic010G175400 Sobic002G169900--Sobic010G175400 Sobic009G211000 Sobic009G211000 Sobic002G169900--Sobic009G211000 Sobic004G355000--Sobic001G207400 Sobic002G430000 Sobic002G430000 Sobic004G355000--Sobic002G430000 Sobic004G355000--Sobic001G248300 Sobic004G355000--Sobic005G001000 Sobic004G355000--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic004G355000--Sobic005G157000 Sobic003G322700 Sobic003G322700 Sobic004G355000--Sobic003G322700 Sobic004G355000--Sobic004G113400 Sobic004G355000--Sobic009G010600
Octagon: transcription factors


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