Gene annotation
Transcriptome id Sobic.002G032700.1
Synonym PSBR, Sb02g002830
Functional annotation "Photosystem II 10kDa polypeptide, chloroplastic (Precursor)" (PubMedID : 26186930)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
PSBR -photosystem II subunit R (At) (PubMedID : 27208977)
photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
UniProt C5X9H4
Pfam PF04725
Panther DB PTHR34369 PTHR34369:SF1
NCBI CDD -
KEGG Orthology K03541; photosystem II 10kDa protein
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II


Orthologs (automatic annotation)
TAIR AT1G79040 : photosystem II subunit R
RAP-DB (Rice) LOC_Os07g05365.1 : photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK21035
Barley HORVU2Hr1G038960.1 , HORVU2Hr1G038960.3 , HORVU2Hr1G038960.4
Wheat TraesCS2D02G253900 , TraesCS2D02G253900 , TraesCS2A02G253100 , TraesCS2A02G253100 , TraesCS2B02G272900 , TraesCS2B02G272900 , TraesCS6A02G374400 , TraesCS6A02G374400 , TraesCS6B02G412100 , TraesCS6D02G358900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G003400 expressed protein -
2 Sobic.002G281500 expressed protein -
3 Sobic.009G211000 phosphotransferase, putative, expressed K14156: choline/ethanolamine kinase
4 Sobic.002G403500 tetratricopeptide-like helical, putative, expressed -
5 Sobic.001G176600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
6 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
7 Sobic.005G209100 SCARECROW, putative, expressed -
8 Sobic.002G169900 hydrolase, NUDIX family, domain containing protein, expressed -
9 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
10 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
12 Sobic.006G076800 serine/threonine-protein kinase receptor precursor, putative, expressed -
13 Sobic.008G009900 lipase-related, putative, expressed -
14 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
15 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.009G006400 auxin-induced protein 5NG4, putative, expressed -
17 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
18 Sobic.010G099100 CREG1 precursor, putative, expressed -
19 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
20 Sobic.006G138400 regulatory subunit, putative, expressed -


Gene co-expression network
sample Sobic002G032700 Sobic002G032700 Sobic006G003400 Sobic006G003400 Sobic002G032700--Sobic006G003400 Sobic002G281500 Sobic002G281500 Sobic002G032700--Sobic002G281500 Sobic009G211000 Sobic009G211000 Sobic002G032700--Sobic009G211000 Sobic002G403500 Sobic002G403500 Sobic002G032700--Sobic002G403500 Sobic001G176600 Sobic001G176600 Sobic002G032700--Sobic001G176600 Sobic001G248300 Sobic001G248300 Sobic002G032700--Sobic001G248300 Sobic005G209100 Sobic005G209100 Sobic002G032700--Sobic005G209100 Sobic002G169900 Sobic002G169900 Sobic002G032700--Sobic002G169900 Sobic001G438600 Sobic001G438600 Sobic002G032700--Sobic001G438600 Sobic004G052900 Sobic004G052900 Sobic006G003400--Sobic004G052900 Sobic006G003400--Sobic001G248300 Sobic002G340100 Sobic002G340100 Sobic006G003400--Sobic002G340100 Sobic004G355000 Sobic004G355000 Sobic006G003400--Sobic004G355000 Sobic006G138400 Sobic006G138400 Sobic006G003400--Sobic006G138400 Sobic001G292200 Sobic001G292200 Sobic006G003400--Sobic001G292200 Sobic001G178700 Sobic001G178700 Sobic006G003400--Sobic001G178700 Sobic006G003400--Sobic002G032700 Sobic003G407300 Sobic003G407300 Sobic006G003400--Sobic003G407300 Sobic002G281500--Sobic002G032700 Sobic002G281500--Sobic002G169900 Sobic002G281500--Sobic001G248300 Sobic003G100800 Sobic003G100800 Sobic002G281500--Sobic003G100800 Sobic002G281500--Sobic006G003400 Sobic003G109100 Sobic003G109100 Sobic002G281500--Sobic003G109100 Sobic002G281500--Sobic001G292200 Sobic001G166600 Sobic001G166600 Sobic002G281500--Sobic001G166600 Sobic004G127400 Sobic004G127400 Sobic002G281500--Sobic004G127400 Sobic009G211000--Sobic002G169900 Sobic009G016600 Sobic009G016600 Sobic009G211000--Sobic009G016600 Sobic001G048766 Sobic001G048766 Sobic009G211000--Sobic001G048766 Sobic009G006400 Sobic009G006400 Sobic009G211000--Sobic009G006400 Sobic002G140700 Sobic002G140700 Sobic009G211000--Sobic002G140700 Sobic009G211000--Sobic002G032700 Sobic001G073500 Sobic001G073500 Sobic009G211000--Sobic001G073500 Sobic004G153501 Sobic004G153501 Sobic009G211000--Sobic004G153501 Sobic004G266400 Sobic004G266400 Sobic009G211000--Sobic004G266400 Sobic002G403500--Sobic001G248300 Sobic004G060900 Sobic004G060900 Sobic002G403500--Sobic004G060900 Sobic002G403500--Sobic003G100800 Sobic001G474500 Sobic001G474500 Sobic002G403500--Sobic001G474500 Sobic002G403500--Sobic001G438600 Sobic002G403500--Sobic001G178700 Sobic009G229800 Sobic009G229800 Sobic002G403500--Sobic009G229800 Sobic002G403500--Sobic002G169900 Sobic002G403500--Sobic004G355000 Sobic002G338100 Sobic002G338100 Sobic001G176600--Sobic002G338100 Sobic001G176600--Sobic001G474500 Sobic001G130000 Sobic001G130000 Sobic001G176600--Sobic001G130000 Sobic010G205500 Sobic010G205500 Sobic001G176600--Sobic010G205500 Sobic008G017800 Sobic008G017800 Sobic001G176600--Sobic008G017800 Sobic009G034700 Sobic009G034700 Sobic001G176600--Sobic009G034700 Sobic007G068100 Sobic007G068100 Sobic001G176600--Sobic007G068100 Sobic001G359500 Sobic001G359500 Sobic001G176600--Sobic001G359500 Sobic001G069900 Sobic001G069900 Sobic001G176600--Sobic001G069900 Sobic001G248300--Sobic004G355000 Sobic001G248300--Sobic002G169900 Sobic001G248300--Sobic001G178700 Sobic001G248300--Sobic004G052900 Sobic005G001000 Sobic005G001000 Sobic001G248300--Sobic005G001000 Sobic009G094300 Sobic009G094300 Sobic001G248300--Sobic009G094300 Sobic010G112000 Sobic010G112000 Sobic001G248300--Sobic010G112000 Sobic004G329400 Sobic004G329400 Sobic001G248300--Sobic004G329400 Sobic004G113400 Sobic004G113400 Sobic001G248300--Sobic004G113400 Sobic009G221000 Sobic009G221000 Sobic005G209100--Sobic009G221000 Sobic008G185300 Sobic008G185300 Sobic005G209100--Sobic008G185300 Sobic005G032800 Sobic005G032800 Sobic005G209100--Sobic005G032800 Sobic001G228800 Sobic001G228800 Sobic005G209100--Sobic001G228800 Sobic005G209100--Sobic001G178700 Sobic009G010600 Sobic009G010600 Sobic005G209100--Sobic009G010600 Sobic008G009900 Sobic008G009900 Sobic005G209100--Sobic008G009900 Sobic008G101000 Sobic008G101000 Sobic005G209100--Sobic008G101000 Sobic005G209100--Sobic006G003400 Sobic002G169900--Sobic001G248300 Sobic010G138000 Sobic010G138000 Sobic002G169900--Sobic010G138000 Sobic007G193700 Sobic007G193700 Sobic002G169900--Sobic007G193700 Sobic010G175500 Sobic010G175500 Sobic002G169900--Sobic010G175500 Sobic001G327800 Sobic001G327800 Sobic002G169900--Sobic001G327800 Sobic007G116200 Sobic007G116200 Sobic002G169900--Sobic007G116200 Sobic006G055200 Sobic006G055200 Sobic002G169900--Sobic006G055200 Sobic010G175400 Sobic010G175400 Sobic002G169900--Sobic010G175400 Sobic002G169900--Sobic009G211000 Sobic001G301700 Sobic001G301700 Sobic001G438600--Sobic001G301700 Sobic001G438600--Sobic004G355000 Sobic001G325200 Sobic001G325200 Sobic001G438600--Sobic001G325200 Sobic001G207400 Sobic001G207400 Sobic001G438600--Sobic001G207400 Sobic003G428400 Sobic003G428400 Sobic001G438600--Sobic003G428400 Sobic001G438600--Sobic007G068100 Sobic001G015500 Sobic001G015500 Sobic001G438600--Sobic001G015500 Sobic001G438600--Sobic001G474500 Sobic007G186200 Sobic007G186200 Sobic001G438600--Sobic007G186200
Octagon: transcription factors


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