Gene annotation
Transcriptome id Sobic.006G138400.1,Sobic.006G138400.2,Sobic.006G138400.4,Sobic.006G138400.3
Synonym Sb06g021780
Functional annotation regulatory subunit, putative, expressed
UniProt C5YBU3 , A0A1Z5RDR7 , A0A1Z5REG8 , A0A1Z5RDT5
Pfam PF13855 PF13306 PF13855
Panther DB PTHR24006 PTHR24006:SF451
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G15740 : Leucine-rich repeat family protein
RAP-DB (Rice) LOC_Os04g42470.4,LOC_Os04g42470.3 : regulatory subunit, putative, expressed
MaizeGDB (Corn) Zm00025a010770 , Zm00025a021180
Brachypodium KQJ83425 , KQJ83424 , KQJ83421 , KQJ83423 , KQJ83422 , PNT61406 , PNT61405
Barley HORVU2Hr1G086980.13 , HORVU2Hr1G086980.22 , HORVU2Hr1G086980.9 , HORVU2Hr1G086980.8 , HORVU2Hr1G086980.7 , HORVU2Hr1G086980.6 , HORVU2Hr1G086980.5 , HORVU2Hr1G086980.4 , HORVU2Hr1G086980.3 , HORVU2Hr1G086980.2 , HORVU2Hr1G086980.1 , HORVU2Hr1G086980.20 , HORVU2Hr1G086980.21 , HORVU2Hr1G086980.17 , HORVU2Hr1G086980.16 , HORVU2Hr1G086980.15 , HORVU2Hr1G086980.14 , HORVU2Hr1G086980.12 , HORVU2Hr1G086980.11 , HORVU2Hr1G086980.10 , HORVU2Hr1G086980.19 , HORVU2Hr1G086980.18
Wheat TraesCS2B02G377000 , TraesCS2B02G377000 , TraesCS2B02G377000 , TraesCS2A02G357700 , TraesCS2A02G357700 , TraesCS2D02G356500 , TraesCS2D02G356500 , TraesCS2D02G356500 , TraesCS2D02G356500
Populus -


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cDNA sequences
Sobic.006G138400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
2 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
3 Sobic.009G121100 expressed protein -
4 Sobic.002G046800 transketolase, putative, expressed K00167: BCKDHB, 2-oxoisovalerate dehydrogenase E1 component beta subunit
5 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
6 Sobic.010G001500 AML1, putative, expressed -
7 Sobic.008G009900 lipase-related, putative, expressed -
8 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
9 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
10 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
11 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
12 Sobic.001G292200 dynamin family protein, putative, expressed -
13 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
15 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
16 Sobic.003G093300 - -
17 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
18 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
19 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
20 Sobic.009G249200 transmembrane protein, putative, expressed -


Gene co-expression network
sample Sobic006G138400 Sobic006G138400 Sobic006G214500 Sobic006G214500 Sobic006G138400--Sobic006G214500 Sobic003G408500 Sobic003G408500 Sobic006G138400--Sobic003G408500 Sobic009G121100 Sobic009G121100 Sobic006G138400--Sobic009G121100 Sobic002G046800 Sobic002G046800 Sobic006G138400--Sobic002G046800 Sobic003G407300 Sobic003G407300 Sobic006G138400--Sobic003G407300 Sobic010G001500 Sobic010G001500 Sobic006G138400--Sobic010G001500 Sobic008G009900 Sobic008G009900 Sobic006G138400--Sobic008G009900 Sobic007G024700 Sobic007G024700 Sobic006G138400--Sobic007G024700 Sobic003G005800 Sobic003G005800 Sobic006G138400--Sobic003G005800 Sobic006G214500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic006G214500--Sobic001G443900 Sobic006G214500--Sobic003G408500 Sobic008G160700 Sobic008G160700 Sobic006G214500--Sobic008G160700 Sobic010G078100 Sobic010G078100 Sobic006G214500--Sobic010G078100 Sobic001G156100 Sobic001G156100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic001G447500 Sobic001G447500 Sobic006G214500--Sobic001G447500 Sobic009G249200 Sobic009G249200 Sobic006G214500--Sobic009G249200 Sobic009G166300 Sobic009G166300 Sobic003G408500--Sobic009G166300 Sobic005G045300 Sobic005G045300 Sobic003G408500--Sobic005G045300 Sobic001G512700 Sobic001G512700 Sobic003G408500--Sobic001G512700 Sobic004G205600 Sobic004G205600 Sobic003G408500--Sobic004G205600 Sobic007G217000 Sobic007G217000 Sobic003G408500--Sobic007G217000 Sobic003G397800 Sobic003G397800 Sobic003G408500--Sobic003G397800 Sobic004G021100 Sobic004G021100 Sobic003G408500--Sobic004G021100 Sobic001G109800 Sobic001G109800 Sobic003G408500--Sobic001G109800 Sobic004G067700 Sobic004G067700 Sobic003G408500--Sobic004G067700 Sobic009G121100--Sobic006G214500 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic009G121100--Sobic001G156100 Sobic009G121100--Sobic001G443900 Sobic001G373200 Sobic001G373200 Sobic009G121100--Sobic001G373200 Sobic009G121100--Sobic010G078100 Sobic004G295800 Sobic004G295800 Sobic009G121100--Sobic004G295800 Sobic002G303000 Sobic002G303000 Sobic009G121100--Sobic002G303000 Sobic004G153501 Sobic004G153501 Sobic002G046800--Sobic004G153501 Sobic003G069500 Sobic003G069500 Sobic002G046800--Sobic003G069500 Sobic002G046800--Sobic006G138400 Sobic004G153400 Sobic004G153400 Sobic002G046800--Sobic004G153400 Sobic001G535800 Sobic001G535800 Sobic002G046800--Sobic001G535800 Sobic002G046800--Sobic006G214500 Sobic001G543800 Sobic001G543800 Sobic002G046800--Sobic001G543800 Sobic004G052900 Sobic004G052900 Sobic002G046800--Sobic004G052900 Sobic002G046800--Sobic009G249200 Sobic003G407300--Sobic009G121100 Sobic003G407300--Sobic001G373200 Sobic003G407300--Sobic003G019100 Sobic003G407300--Sobic006G214500 Sobic001G507300 Sobic001G507300 Sobic003G407300--Sobic001G507300 Sobic003G407300--Sobic004G295800 Sobic009G229800 Sobic009G229800 Sobic003G407300--Sobic009G229800 Sobic003G407300--Sobic002G303000 Sobic003G407300--Sobic007G024700 Sobic003G322700 Sobic003G322700 Sobic010G001500--Sobic003G322700 Sobic010G001500--Sobic007G024700 Sobic004G355000 Sobic004G355000 Sobic010G001500--Sobic004G355000 Sobic006G204900 Sobic006G204900 Sobic010G001500--Sobic006G204900 Sobic010G224000 Sobic010G224000 Sobic010G001500--Sobic010G224000 Sobic002G419800 Sobic002G419800 Sobic010G001500--Sobic002G419800 Sobic001G207400 Sobic001G207400 Sobic010G001500--Sobic001G207400 Sobic001G178700 Sobic001G178700 Sobic010G001500--Sobic001G178700 Sobic001G146800 Sobic001G146800 Sobic010G001500--Sobic001G146800 Sobic008G009900--Sobic001G178700 Sobic008G009900--Sobic010G001500 Sobic008G009900--Sobic006G138400 Sobic008G009900--Sobic003G407300 Sobic008G009900--Sobic004G052900 Sobic008G009900--Sobic004G355000 Sobic008G009900--Sobic009G249200 Sobic008G009900--Sobic007G024700 Sobic005G032800 Sobic005G032800 Sobic008G009900--Sobic005G032800 Sobic002G270500 Sobic002G270500 Sobic007G024700--Sobic002G270500 Sobic009G094300 Sobic009G094300 Sobic007G024700--Sobic009G094300 Sobic007G024700--Sobic009G249200 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic002G132000 Sobic002G132000 Sobic007G024700--Sobic002G132000 Sobic007G024700--Sobic002G419800 Sobic002G188500 Sobic002G188500 Sobic003G005800--Sobic002G188500 Sobic003G005800--Sobic001G443900 Sobic009G235900 Sobic009G235900 Sobic003G005800--Sobic009G235900 Sobic003G005800--Sobic008G160700 Sobic004G037900 Sobic004G037900 Sobic003G005800--Sobic004G037900 Sobic003G005800--Sobic006G138400 Sobic001G194900 Sobic001G194900 Sobic003G005800--Sobic001G194900 Sobic003G005800--Sobic009G121100 Sobic003G005800--Sobic006G214500
Octagon: transcription factors


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