Gene annotation
Transcriptome id Sobic.001G156100.1,Sobic.001G156100.2
Synonym DELTA-OAT, Sb01g013600
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
aminotransferase, putative, expressed
UniProt C5WR74 , A0A1Z5S6A1
Pfam PF00202
Panther DB PTHR11986 PTHR11986:SF18
NCBI CDD -
KEGG Orthology K00819; rocD, ornithine--oxo-acid transaminase
Gene Ontology GO:0008483; transaminase activity


Orthologs (automatic annotation)
TAIR AT5G46180 : ornithine-delta-aminotransferase
RAP-DB (Rice) LOC_Os03g44150.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a007275
Brachypodium KQK13994
Barley HORVU5Hr1G092960.3 , HORVU5Hr1G092960.2 , HORVU5Hr1G092960.1 , HORVU5Hr1G092960.5 , HORVU5Hr1G092960.4
Wheat TraesCS5B02G376900 , TraesCS5A02G375000 , TraesCS5D02G384500 , TraesCS5D02G384500
Populus -


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cDNA sequences
Sobic.001G156100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G121100 expressed protein -
2 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
3 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
4 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
5 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
6 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
7 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
8 Sobic.001G373200 lipase precursor, putative, expressed -
9 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
10 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
11 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
12 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
13 Sobic.006G138400 regulatory subunit, putative, expressed -
14 Sobic.002G113300 expressed protein -
15 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
16 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
17 Sobic.003G019100 KIN, antigenic determinant of recA protein, putative, expressed K13102: DNA/RNA-binding protein KIN17
18 Sobic.008G021800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NAC domain transcription factor, putative, expressed -
19 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
20 Sobic.008G191100 nodulin, putative, expressed -


Gene co-expression network
sample Sobic001G156100 Sobic001G156100 Sobic009G121100 Sobic009G121100 Sobic001G156100--Sobic009G121100 Sobic001G447500 Sobic001G447500 Sobic001G156100--Sobic001G447500 Sobic006G214500 Sobic006G214500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic008G160700 Sobic008G160700 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G373200 Sobic001G373200 Sobic001G156100--Sobic001G373200 Sobic004G295800 Sobic004G295800 Sobic001G156100--Sobic004G295800 Sobic009G121100--Sobic006G214500 Sobic003G407300 Sobic003G407300 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic009G121100--Sobic001G156100 Sobic001G443900 Sobic001G443900 Sobic009G121100--Sobic001G443900 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic009G121100--Sobic004G295800 Sobic002G303000 Sobic002G303000 Sobic009G121100--Sobic002G303000 Sobic001G447500--Sobic001G156100 Sobic001G447500--Sobic006G214500 Sobic003G329400 Sobic003G329400 Sobic001G447500--Sobic003G329400 Sobic003G148800 Sobic003G148800 Sobic001G447500--Sobic003G148800 Sobic008G062200 Sobic008G062200 Sobic001G447500--Sobic008G062200 Sobic007G219900 Sobic007G219900 Sobic001G447500--Sobic007G219900 Sobic001G447500--Sobic003G407300 Sobic001G447500--Sobic009G121100 Sobic001G447500--Sobic001G443900 Sobic006G214500--Sobic009G121100 Sobic006G214500--Sobic001G443900 Sobic003G408500 Sobic003G408500 Sobic006G214500--Sobic003G408500 Sobic006G214500--Sobic008G160700 Sobic006G214500--Sobic010G078100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic006G214500--Sobic001G447500 Sobic009G249200 Sobic009G249200 Sobic006G214500--Sobic009G249200 Sobic002G152200--Sobic001G156100 Sobic002G152200--Sobic009G229800 Sobic007G202600 Sobic007G202600 Sobic002G152200--Sobic007G202600 Sobic001G427100 Sobic001G427100 Sobic002G152200--Sobic001G427100 Sobic006G138400 Sobic006G138400 Sobic002G152200--Sobic006G138400 Sobic003G145900 Sobic003G145900 Sobic002G152200--Sobic003G145900 Sobic002G152200--Sobic009G121100 Sobic002G152200--Sobic001G443900 Sobic004G330900 Sobic004G330900 Sobic002G152200--Sobic004G330900 Sobic009G229800--Sobic003G407300 Sobic009G229800--Sobic001G156100 Sobic004G060900 Sobic004G060900 Sobic009G229800--Sobic004G060900 Sobic009G229800--Sobic001G373200 Sobic009G229800--Sobic009G121100 Sobic009G229800--Sobic001G443900 Sobic002G419800 Sobic002G419800 Sobic009G229800--Sobic002G419800 Sobic009G057300 Sobic009G057300 Sobic009G229800--Sobic009G057300 Sobic007G172400 Sobic007G172400 Sobic009G229800--Sobic007G172400 Sobic010G001600 Sobic010G001600 Sobic008G160700--Sobic010G001600 Sobic001G194900 Sobic001G194900 Sobic008G160700--Sobic001G194900 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic009G235900 Sobic009G235900 Sobic008G160700--Sobic009G235900 Sobic008G160700--Sobic006G214500 Sobic006G124900 Sobic006G124900 Sobic008G160700--Sobic006G124900 Sobic008G160700--Sobic002G303000 Sobic008G160700--Sobic009G027000 Sobic006G122400 Sobic006G122400 Sobic009G027000--Sobic006G122400 Sobic005G181000 Sobic005G181000 Sobic009G027000--Sobic005G181000 Sobic009G027000--Sobic008G160700 Sobic004G297400 Sobic004G297400 Sobic009G027000--Sobic004G297400 Sobic009G027000--Sobic010G078100 Sobic009G027000--Sobic007G130600 Sobic009G027000--Sobic001G156100 Sobic007G078000 Sobic007G078000 Sobic009G027000--Sobic007G078000 Sobic004G320000 Sobic004G320000 Sobic009G027000--Sobic004G320000 Sobic001G373200--Sobic003G407300 Sobic001G373200--Sobic009G121100 Sobic001G373200--Sobic003G019100 Sobic001G373200--Sobic004G295800 Sobic007G024700 Sobic007G024700 Sobic001G373200--Sobic007G024700 Sobic001G373200--Sobic006G214500 Sobic002G179900 Sobic002G179900 Sobic001G373200--Sobic002G179900 Sobic001G373200--Sobic001G156100 Sobic001G373200--Sobic009G249200 Sobic008G191100 Sobic008G191100 Sobic004G295800--Sobic008G191100 Sobic002G132000 Sobic002G132000 Sobic004G295800--Sobic002G132000 Sobic004G295800--Sobic007G024700 Sobic004G295800--Sobic009G121100 Sobic004G006200 Sobic004G006200 Sobic004G295800--Sobic004G006200 Sobic004G021100 Sobic004G021100 Sobic004G295800--Sobic004G021100 Sobic004G295800--Sobic001G373200 Sobic004G295800--Sobic003G407300 Sobic001G290000 Sobic001G290000 Sobic004G295800--Sobic001G290000
Octagon: transcription factors


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