Gene annotation
Transcriptome id Sobic.002G113300.1
Synonym Sb02g009680
Functional annotation expressed protein
UniProt C5X4A8
Pfam PF10914
Panther DB PTHR31204 PTHR31204:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G32380 : Transmembrane protein 97, predicted
RAP-DB (Rice) LOC_Os03g44450.1 : expressed protein
MaizeGDB (Corn) Zm00025a045711
Brachypodium -
Barley HORVU3Hr1G018080.3 , HORVU3Hr1G018080.4 , HORVU3Hr1G018080.2
Wheat TraesCS3B02G116100 , TraesCS3A02G099700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
2 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
3 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
4 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
5 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
6 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
7 Sobic.008G021800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NAC domain transcription factor, putative, expressed -
8 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
9 Sobic.003G241000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CTP synthase, putative, expressed K01937: pyrG, CTP synthase
10 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
11 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
12 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
13 Sobic.006G149700 DUF584 domain containing protein, putative, expressed -
14 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
15 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
16 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
17 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
18 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
19 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
20 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G113300 Sobic002G113300 Sobic006G127100 Sobic006G127100 Sobic002G113300--Sobic006G127100 Sobic007G219900 Sobic007G219900 Sobic002G113300--Sobic007G219900 Sobic001G156100 Sobic001G156100 Sobic002G113300--Sobic001G156100 Sobic003G009100 Sobic003G009100 Sobic002G113300--Sobic003G009100 Sobic001G373100 Sobic001G373100 Sobic002G113300--Sobic001G373100 Sobic004G345800 Sobic004G345800 Sobic002G113300--Sobic004G345800 Sobic008G021800 Sobic008G021800 Sobic002G113300--Sobic008G021800 Sobic001G447500 Sobic001G447500 Sobic002G113300--Sobic001G447500 Sobic003G241000 Sobic003G241000 Sobic002G113300--Sobic003G241000 Sobic006G127100--Sobic007G219900 Sobic006G127100--Sobic002G113300 Sobic006G127100--Sobic004G345800 Sobic004G333200 Sobic004G333200 Sobic006G127100--Sobic004G333200 Sobic004G321800 Sobic004G321800 Sobic006G127100--Sobic004G321800 Sobic003G148800 Sobic003G148800 Sobic006G127100--Sobic003G148800 Sobic003G366400 Sobic003G366400 Sobic006G127100--Sobic003G366400 Sobic002G324000 Sobic002G324000 Sobic006G127100--Sobic002G324000 Sobic003G184900 Sobic003G184900 Sobic006G127100--Sobic003G184900 Sobic007G219900--Sobic006G127100 Sobic005G018500 Sobic005G018500 Sobic007G219900--Sobic005G018500 Sobic007G219900--Sobic003G366400 Sobic009G054500 Sobic009G054500 Sobic007G219900--Sobic009G054500 Sobic007G219900--Sobic003G148800 Sobic004G260000 Sobic004G260000 Sobic007G219900--Sobic004G260000 Sobic002G215700 Sobic002G215700 Sobic007G219900--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic007G219900--Sobic009G226300 Sobic001G227800 Sobic001G227800 Sobic007G219900--Sobic001G227800 Sobic009G121100 Sobic009G121100 Sobic001G156100--Sobic009G121100 Sobic001G156100--Sobic001G447500 Sobic006G214500 Sobic006G214500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic008G160700 Sobic008G160700 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G373200 Sobic001G373200 Sobic001G156100--Sobic001G373200 Sobic004G295800 Sobic004G295800 Sobic001G156100--Sobic004G295800 Sobic001G023200 Sobic001G023200 Sobic003G009100--Sobic001G023200 Sobic003G354400 Sobic003G354400 Sobic003G009100--Sobic003G354400 Sobic005G150800 Sobic005G150800 Sobic003G009100--Sobic005G150800 Sobic003G009100--Sobic002G113300 Sobic002G132000 Sobic002G132000 Sobic003G009100--Sobic002G132000 Sobic004G006200 Sobic004G006200 Sobic003G009100--Sobic004G006200 Sobic009G054700 Sobic009G054700 Sobic003G009100--Sobic009G054700 Sobic004G203100 Sobic004G203100 Sobic003G009100--Sobic004G203100 Sobic006G192700 Sobic006G192700 Sobic003G009100--Sobic006G192700 Sobic001G373100--Sobic008G160700 Sobic009G119200 Sobic009G119200 Sobic001G373100--Sobic009G119200 Sobic010G078100 Sobic010G078100 Sobic001G373100--Sobic010G078100 Sobic001G373100--Sobic001G156100 Sobic006G149700 Sobic006G149700 Sobic001G373100--Sobic006G149700 Sobic001G373100--Sobic009G027000 Sobic003G145900 Sobic003G145900 Sobic001G373100--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic001G373100--Sobic001G359400 Sobic001G373100--Sobic002G113300 Sobic003G061800 Sobic003G061800 Sobic004G345800--Sobic003G061800 Sobic001G474500 Sobic001G474500 Sobic004G345800--Sobic001G474500 Sobic004G345800--Sobic003G184900 Sobic003G388251 Sobic003G388251 Sobic004G345800--Sobic003G388251 Sobic008G079300 Sobic008G079300 Sobic004G345800--Sobic008G079300 Sobic007G068100 Sobic007G068100 Sobic004G345800--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic004G345800--Sobic009G057300 Sobic004G345800--Sobic006G127100 Sobic004G345800--Sobic004G321800 Sobic008G021800--Sobic003G241000 Sobic008G021800--Sobic001G156100 Sobic008G021800--Sobic002G113300 Sobic008G021800--Sobic001G447500 Sobic002G304000 Sobic002G304000 Sobic008G021800--Sobic002G304000 Sobic006G138400 Sobic006G138400 Sobic008G021800--Sobic006G138400 Sobic008G021800--Sobic009G121100 Sobic003G329400 Sobic003G329400 Sobic008G021800--Sobic003G329400 Sobic008G021800--Sobic006G127100 Sobic001G447500--Sobic001G156100 Sobic001G447500--Sobic006G214500 Sobic001G447500--Sobic003G329400 Sobic001G447500--Sobic003G148800 Sobic008G062200 Sobic008G062200 Sobic001G447500--Sobic008G062200 Sobic001G447500--Sobic007G219900 Sobic003G407300 Sobic003G407300 Sobic001G447500--Sobic003G407300 Sobic001G447500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic001G447500--Sobic001G443900 Sobic003G241000--Sobic008G021800 Sobic003G241000--Sobic002G113300 Sobic003G241000--Sobic001G447500 Sobic003G241000--Sobic006G127100 Sobic004G297400 Sobic004G297400 Sobic003G241000--Sobic004G297400 Sobic003G241000--Sobic001G156100 Sobic003G061400 Sobic003G061400 Sobic003G241000--Sobic003G061400 Sobic001G408200 Sobic001G408200 Sobic003G241000--Sobic001G408200 Sobic003G241000--Sobic003G061800
Octagon: transcription factors


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