Gene annotation
Transcriptome id Sobic.003G241000.1,Sobic.003G241000.3,Sobic.003G241000.2
Synonym Sb03g029790, emb2742
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
CTP synthase, putative, expressed
UniProt A0A1B6Q524 , A0A1B6Q520 , A0A1B6Q523
Pfam PF00117 PF06418
Panther DB PTHR11550 PTHR11550:SF10
NCBI CDD -
KEGG Orthology K01937; pyrG, CTP synthase
Gene Ontology GO:0006221; pyrimidine nucleotide biosynthetic process GO:0003883CTP synthase activity


Orthologs (automatic annotation)
TAIR AT3G12670 : CTP synthase family protein
RAP-DB (Rice) LOC_Os01g46570.1 : CTP synthase, putative, expressed
MaizeGDB (Corn) Zm00025a044646 , Zm00025a036664 , Zm00025a038694 , Zm00025a028208
Brachypodium PNT70676 , KQK09000 , KQK09001 , KQK09002 , KQK04764 , KQK04765 , KQK04626
Barley HORVU1Hr1G093240.32 , HORVU1Hr1G093240.11 , HORVU1Hr1G093240.10 , HORVU1Hr1G093240.13 , HORVU1Hr1G093240.12 , HORVU1Hr1G093240.15 , HORVU1Hr1G093240.14 , HORVU1Hr1G093240.17 , HORVU1Hr1G093240.16 , HORVU1Hr1G093240.19 , HORVU1Hr1G093240.18 , HORVU3Hr1G058990.8 , HORVU3Hr1G058990.9 , HORVU3Hr1G058990.6 , HORVU3Hr1G058990.7 , HORVU3Hr1G058990.4 , HORVU3Hr1G058990.5 , HORVU3Hr1G058990.2 , HORVU3Hr1G058990.3 , HORVU3Hr1G058990.1 , HORVU3Hr1G058990.14 , HORVU3Hr1G058990.15 , HORVU3Hr1G058990.16 , HORVU3Hr1G058990.17 , HORVU3Hr1G058990.10 , HORVU3Hr1G058990.11 , HORVU3Hr1G058990.12 , HORVU3Hr1G058990.13 , HORVU3Hr1G058990.18 , HORVU3Hr1G058990.19 , HORVU1Hr1G093240.5 , HORVU1Hr1G093240.4 , HORVU1Hr1G093240.7 , HORVU1Hr1G093240.6 , HORVU1Hr1G093240.1 , HORVU1Hr1G093240.3 , HORVU1Hr1G093240.2 , HORVU1Hr1G093240.9 , HORVU1Hr1G093240.8 , HORVU1Hr1G093240.36 , HORVU1Hr1G090430.5 , HORVU1Hr1G090430.4 , HORVU1Hr1G093240.33 , HORVU1Hr1G090430.2 , HORVU1Hr1G090430.1 , HORVU1Hr1G093240.30 , HORVU3Hr1G058990.29 , HORVU3Hr1G058990.28 , HORVU1Hr1G093240.34 , HORVU3Hr1G058990.21 , HORVU1Hr1G090430.3 , HORVU3Hr1G058990.23 , HORVU3Hr1G058990.22 , HORVU3Hr1G058990.25 , HORVU3Hr1G058990.27 , HORVU3Hr1G058990.26 , HORVU1Hr1G093240.31 , HORVU1Hr1G093240.28 , HORVU1Hr1G093240.29 , HORVU1Hr1G093240.24 , HORVU1Hr1G093240.25 , HORVU1Hr1G093240.26 , HORVU1Hr1G093240.27 , HORVU1Hr1G093240.20 , HORVU1Hr1G093240.21 , HORVU1Hr1G093240.22 , HORVU1Hr1G093240.23 , HORVU3Hr1G058990.20 , HORVU1Hr1G093240.35
Wheat TraesCS3A02G236700 , TraesCS3A02G236700 , TraesCS3A02G236700 , TraesCS1B02G441900 , TraesCS1D02G419400 , TraesCS3D02G237100 , TraesCS1B02G462000 , TraesCS1A02G427100 , TraesCS3B02G263100 , TraesCS3B02G263100 , TraesCS1D02G436900 , TraesCS1D02G419400 , TraesCS1A02G411600 , TraesCS1A02G411600 , TraesCS1A02G411600 , TraesCS1A02G411600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G021800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NAC domain transcription factor, putative, expressed -
2 Sobic.002G113300 expressed protein -
3 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
4 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
5 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
6 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
7 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
8 Sobic.001G408200 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
9 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
10 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
11 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
12 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
13 Sobic.006G157700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glycosyl hydrolase family 3 protein, putative, expressed -
14 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
15 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
16 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
17 Sobic.008G144401 - -
18 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
19 Sobic.001G111500 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome A, putative, expressed K12120: phytochrome A
20 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase


Gene co-expression network
sample Sobic003G241000 Sobic003G241000 Sobic008G021800 Sobic008G021800 Sobic003G241000--Sobic008G021800 Sobic002G113300 Sobic002G113300 Sobic003G241000--Sobic002G113300 Sobic001G447500 Sobic001G447500 Sobic003G241000--Sobic001G447500 Sobic006G127100 Sobic006G127100 Sobic003G241000--Sobic006G127100 Sobic004G297400 Sobic004G297400 Sobic003G241000--Sobic004G297400 Sobic001G156100 Sobic001G156100 Sobic003G241000--Sobic001G156100 Sobic003G061400 Sobic003G061400 Sobic003G241000--Sobic003G061400 Sobic001G408200 Sobic001G408200 Sobic003G241000--Sobic001G408200 Sobic003G061800 Sobic003G061800 Sobic003G241000--Sobic003G061800 Sobic008G021800--Sobic003G241000 Sobic008G021800--Sobic001G156100 Sobic008G021800--Sobic002G113300 Sobic008G021800--Sobic001G447500 Sobic002G304000 Sobic002G304000 Sobic008G021800--Sobic002G304000 Sobic006G138400 Sobic006G138400 Sobic008G021800--Sobic006G138400 Sobic009G121100 Sobic009G121100 Sobic008G021800--Sobic009G121100 Sobic003G329400 Sobic003G329400 Sobic008G021800--Sobic003G329400 Sobic008G021800--Sobic006G127100 Sobic002G113300--Sobic006G127100 Sobic007G219900 Sobic007G219900 Sobic002G113300--Sobic007G219900 Sobic002G113300--Sobic001G156100 Sobic003G009100 Sobic003G009100 Sobic002G113300--Sobic003G009100 Sobic001G373100 Sobic001G373100 Sobic002G113300--Sobic001G373100 Sobic004G345800 Sobic004G345800 Sobic002G113300--Sobic004G345800 Sobic002G113300--Sobic008G021800 Sobic002G113300--Sobic001G447500 Sobic002G113300--Sobic003G241000 Sobic001G447500--Sobic001G156100 Sobic006G214500 Sobic006G214500 Sobic001G447500--Sobic006G214500 Sobic001G447500--Sobic003G329400 Sobic003G148800 Sobic003G148800 Sobic001G447500--Sobic003G148800 Sobic008G062200 Sobic008G062200 Sobic001G447500--Sobic008G062200 Sobic001G447500--Sobic007G219900 Sobic003G407300 Sobic003G407300 Sobic001G447500--Sobic003G407300 Sobic001G447500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic001G447500--Sobic001G443900 Sobic006G127100--Sobic007G219900 Sobic006G127100--Sobic002G113300 Sobic006G127100--Sobic004G345800 Sobic004G333200 Sobic004G333200 Sobic006G127100--Sobic004G333200 Sobic004G321800 Sobic004G321800 Sobic006G127100--Sobic004G321800 Sobic006G127100--Sobic003G148800 Sobic003G366400 Sobic003G366400 Sobic006G127100--Sobic003G366400 Sobic002G324000 Sobic002G324000 Sobic006G127100--Sobic002G324000 Sobic003G184900 Sobic003G184900 Sobic006G127100--Sobic003G184900 Sobic009G027000 Sobic009G027000 Sobic004G297400--Sobic009G027000 Sobic001G028700 Sobic001G028700 Sobic004G297400--Sobic001G028700 Sobic006G122400 Sobic006G122400 Sobic004G297400--Sobic006G122400 Sobic010G078100 Sobic010G078100 Sobic004G297400--Sobic010G078100 Sobic010G042900 Sobic010G042900 Sobic004G297400--Sobic010G042900 Sobic008G160700 Sobic008G160700 Sobic004G297400--Sobic008G160700 Sobic001G111366 Sobic001G111366 Sobic004G297400--Sobic001G111366 Sobic007G002200 Sobic007G002200 Sobic004G297400--Sobic007G002200 Sobic001G111500 Sobic001G111500 Sobic004G297400--Sobic001G111500 Sobic001G156100--Sobic009G121100 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic001G156100--Sobic008G160700 Sobic001G156100--Sobic009G027000 Sobic001G373200 Sobic001G373200 Sobic001G156100--Sobic001G373200 Sobic004G295800 Sobic004G295800 Sobic001G156100--Sobic004G295800 Sobic003G061400--Sobic004G333200 Sobic010G176700 Sobic010G176700 Sobic003G061400--Sobic010G176700 Sobic003G442500 Sobic003G442500 Sobic003G061400--Sobic003G442500 Sobic001G132000 Sobic001G132000 Sobic003G061400--Sobic001G132000 Sobic005G215900 Sobic005G215900 Sobic003G061400--Sobic005G215900 Sobic010G210200 Sobic010G210200 Sobic003G061400--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic003G061400--Sobic005G024900 Sobic009G016800 Sobic009G016800 Sobic003G061400--Sobic009G016800 Sobic003G061400--Sobic006G127100 Sobic003G303300 Sobic003G303300 Sobic001G408200--Sobic003G303300 Sobic005G079900 Sobic005G079900 Sobic001G408200--Sobic005G079900 Sobic001G474700 Sobic001G474700 Sobic001G408200--Sobic001G474700 Sobic001G397400 Sobic001G397400 Sobic001G408200--Sobic001G397400 Sobic001G408200--Sobic001G156100 Sobic003G005600 Sobic003G005600 Sobic001G408200--Sobic003G005600 Sobic004G101900 Sobic004G101900 Sobic001G408200--Sobic004G101900 Sobic001G224600 Sobic001G224600 Sobic001G408200--Sobic001G224600 Sobic001G408200--Sobic002G304000 Sobic009G057300 Sobic009G057300 Sobic003G061800--Sobic009G057300 Sobic003G061800--Sobic004G345800 Sobic003G354400 Sobic003G354400 Sobic003G061800--Sobic003G354400 Sobic001G474500 Sobic001G474500 Sobic003G061800--Sobic001G474500 Sobic009G126900 Sobic009G126900 Sobic003G061800--Sobic009G126900 Sobic003G388251 Sobic003G388251 Sobic003G061800--Sobic003G388251 Sobic007G068100 Sobic007G068100 Sobic003G061800--Sobic007G068100 Sobic003G061800--Sobic003G329400 Sobic003G061800--Sobic004G101900
Octagon: transcription factors


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