Gene annotation
Transcriptome id Sobic.001G408200.6,Sobic.001G408200.3,Sobic.001G408200.5,Sobic.001G408200.7,Sobic.001G408200.1,Sobic.001G408200.2
Synonym KIN10, AKIN10, SNRK1.1, Sb01g038560
Functional annotation Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32 (PubMedID : 28624908)
CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt A5HNE9 , A0A1B6QNX7 , A0A1B6QNY4
Pfam PF14531 PF02149 PF00627 PF14531
Panther DB PTHR24343 PTHR24343:SF156
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology K07198; PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01090 : SNF1 kinase homolog 10
RAP-DB (Rice) LOC_Os08g37800.1,LOC_Os03g17980.1 : CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed,CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a001960
Brachypodium KQK22176
Barley HORVU3Hr1G108000.11 , HORVU3Hr1G108000.14 , HORVU3Hr1G108000.15 , HORVU3Hr1G108000.16 , HORVU3Hr1G108000.6 , HORVU3Hr1G108000.7 , HORVU3Hr1G108000.8 , HORVU3Hr1G108000.9 , HORVU3Hr1G108000.3 , HORVU3Hr1G108000.4 , HORVU3Hr1G108000.5
Wheat TraesCS3B02G544700 , TraesCS3B02G544300 , TraesCS3B02G544400 , TraesCS3B02G544400 , TraesCS3B02G544400 , TraesCS3D02G491900 , TraesCS3D02G491900 , TraesCS4D02G196100 , TraesCS4A02G108700
Populus -


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cDNA sequences
Sobic.001G408200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic
2 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
3 Sobic.001G474700 expressed protein -
4 Sobic.001G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
5 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
6 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
7 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
8 Sobic.001G224600 peroxisome assembly protein 12, putative, expressed K13345: PEX12, peroxin-12
9 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
10 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
11 Sobic.003G241000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CTP synthase, putative, expressed K01937: pyrG, CTP synthase
12 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
13 Sobic.009G193300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
14 Sobic.006G192700 expressed protein -
15 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
16 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
17 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
18 Sobic.010G064700 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
19 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
20 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase


Gene co-expression network
sample Sobic001G408200 Sobic001G408200 Sobic003G303300 Sobic003G303300 Sobic001G408200--Sobic003G303300 Sobic005G079900 Sobic005G079900 Sobic001G408200--Sobic005G079900 Sobic001G474700 Sobic001G474700 Sobic001G408200--Sobic001G474700 Sobic001G397400 Sobic001G397400 Sobic001G408200--Sobic001G397400 Sobic001G156100 Sobic001G156100 Sobic001G408200--Sobic001G156100 Sobic003G005600 Sobic003G005600 Sobic001G408200--Sobic003G005600 Sobic004G101900 Sobic004G101900 Sobic001G408200--Sobic004G101900 Sobic001G224600 Sobic001G224600 Sobic001G408200--Sobic001G224600 Sobic002G304000 Sobic002G304000 Sobic001G408200--Sobic002G304000 Sobic003G303300--Sobic005G079900 Sobic003G303300--Sobic001G408200 Sobic005G231900 Sobic005G231900 Sobic003G303300--Sobic005G231900 Sobic003G303300--Sobic004G101900 Sobic001G360600 Sobic001G360600 Sobic003G303300--Sobic001G360600 Sobic009G234800 Sobic009G234800 Sobic003G303300--Sobic009G234800 Sobic005G215900 Sobic005G215900 Sobic003G303300--Sobic005G215900 Sobic006G192700 Sobic006G192700 Sobic003G303300--Sobic006G192700 Sobic003G257000 Sobic003G257000 Sobic003G303300--Sobic003G257000 Sobic005G079900--Sobic004G101900 Sobic005G079900--Sobic009G234800 Sobic005G079900--Sobic005G231900 Sobic005G079900--Sobic003G303300 Sobic001G488500 Sobic001G488500 Sobic005G079900--Sobic001G488500 Sobic001G512800 Sobic001G512800 Sobic005G079900--Sobic001G512800 Sobic002G215700 Sobic002G215700 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic004G246200 Sobic004G246200 Sobic005G079900--Sobic004G246200 Sobic009G126900 Sobic009G126900 Sobic001G474700--Sobic009G126900 Sobic001G427100 Sobic001G427100 Sobic001G474700--Sobic001G427100 Sobic001G373200 Sobic001G373200 Sobic001G474700--Sobic001G373200 Sobic003G195500 Sobic003G195500 Sobic001G474700--Sobic003G195500 Sobic001G474700--Sobic003G005600 Sobic004G295800 Sobic004G295800 Sobic001G474700--Sobic004G295800 Sobic003G036800 Sobic003G036800 Sobic001G474700--Sobic003G036800 Sobic007G024700 Sobic007G024700 Sobic001G474700--Sobic007G024700 Sobic002G132000 Sobic002G132000 Sobic001G474700--Sobic002G132000 Sobic001G397400--Sobic001G408200 Sobic002G172900 Sobic002G172900 Sobic001G397400--Sobic002G172900 Sobic001G397400--Sobic001G156100 Sobic001G023200 Sobic001G023200 Sobic001G397400--Sobic001G023200 Sobic001G397400--Sobic001G427100 Sobic003G009100 Sobic003G009100 Sobic001G397400--Sobic003G009100 Sobic004G162400 Sobic004G162400 Sobic001G397400--Sobic004G162400 Sobic001G397400--Sobic003G005600 Sobic001G397400--Sobic001G474700 Sobic009G121100 Sobic009G121100 Sobic001G156100--Sobic009G121100 Sobic001G447500 Sobic001G447500 Sobic001G156100--Sobic001G447500 Sobic006G214500 Sobic006G214500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic008G160700 Sobic008G160700 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G156100--Sobic001G373200 Sobic001G156100--Sobic004G295800 Sobic003G005600--Sobic009G126900 Sobic003G005600--Sobic002G304000 Sobic001G003000 Sobic001G003000 Sobic003G005600--Sobic001G003000 Sobic003G329400 Sobic003G329400 Sobic003G005600--Sobic003G329400 Sobic006G271200 Sobic006G271200 Sobic003G005600--Sobic006G271200 Sobic003G005600--Sobic004G101900 Sobic008G062200 Sobic008G062200 Sobic003G005600--Sobic008G062200 Sobic010G043400 Sobic010G043400 Sobic003G005600--Sobic010G043400 Sobic010G064700 Sobic010G064700 Sobic003G005600--Sobic010G064700 Sobic004G101900--Sobic002G304000 Sobic004G101900--Sobic002G215700 Sobic001G325200 Sobic001G325200 Sobic004G101900--Sobic001G325200 Sobic009G226300 Sobic009G226300 Sobic004G101900--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic004G101900--Sobic009G054500 Sobic004G101900--Sobic008G062200 Sobic003G148800 Sobic003G148800 Sobic004G101900--Sobic003G148800 Sobic004G124200 Sobic004G124200 Sobic004G101900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic004G101900--Sobic001G015500 Sobic001G290000 Sobic001G290000 Sobic001G224600--Sobic001G290000 Sobic004G264400 Sobic004G264400 Sobic001G224600--Sobic004G264400 Sobic001G224600--Sobic007G024700 Sobic001G207400 Sobic001G207400 Sobic001G224600--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic001G224600--Sobic004G355000 Sobic009G113000 Sobic009G113000 Sobic001G224600--Sobic009G113000 Sobic004G113400 Sobic004G113400 Sobic001G224600--Sobic004G113400 Sobic001G065000 Sobic001G065000 Sobic001G224600--Sobic001G065000 Sobic004G052900 Sobic004G052900 Sobic001G224600--Sobic004G052900 Sobic002G304000--Sobic009G226300 Sobic002G304000--Sobic009G054500 Sobic002G304000--Sobic004G101900 Sobic002G304000--Sobic003G148800 Sobic002G304000--Sobic002G215700 Sobic002G304000--Sobic008G062200 Sobic002G304000--Sobic001G325200 Sobic003G355600 Sobic003G355600 Sobic002G304000--Sobic003G355600 Sobic003G105800 Sobic003G105800 Sobic002G304000--Sobic003G105800
Octagon: transcription factors


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