Gene annotation
Transcriptome id Sobic.003G303300.1,Sobic.003G303300.2
Synonym Sb03g035220, YLS4, ASP3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt A0A1B6Q670 , A0A1B6Q673
Pfam PF00155
Panther DB PTHR11879 PTHR11879:SF16
NCBI CDD -
KEGG Orthology K14454; aspartate aminotransferase, cytoplasmic
Gene Ontology GO:0009058; biosynthetic process GO:0008483transaminase activity GO:0006520cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT5G11520 : aspartate aminotransferase 3
RAP-DB (Rice) LOC_Os01g55540.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027488
Brachypodium KQK09840
Barley HORVU3Hr1G073220.9 , HORVU3Hr1G073220.8 , HORVU3Hr1G073220.3 , HORVU3Hr1G073220.2 , HORVU3Hr1G073220.1 , HORVU3Hr1G073220.7 , HORVU3Hr1G073220.6 , HORVU3Hr1G073220.5 , HORVU3Hr1G073220.4 , HORVU3Hr1G073220.13 , HORVU3Hr1G073220.12 , HORVU3Hr1G073220.11 , HORVU3Hr1G073220.10 , HORVU3Hr1G073220.14
Wheat TraesCS3B02G331100 , TraesCS3B02G331100 , TraesCS3A02G305400 , TraesCS3A02G305400
Populus -


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cDNA sequences
Sobic.003G303300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
2 Sobic.001G408200 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
3 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
4 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
5 Sobic.001G360600 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
6 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
7 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
8 Sobic.006G192700 expressed protein -
9 Sobic.003G257000 THAP domain-containing protein 4, putative, expressed -
10 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
11 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
12 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
14 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
15 Sobic.002G381300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
16 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
17 Sobic.002G058500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD-linked oxidoreductase protein, putative, expressed K18204: D-2-hydroxyglutarate dehydrogenase
18 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
19 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
20 Sobic.001G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -


Gene co-expression network
sample Sobic003G303300 Sobic003G303300 Sobic005G079900 Sobic005G079900 Sobic003G303300--Sobic005G079900 Sobic001G408200 Sobic001G408200 Sobic003G303300--Sobic001G408200 Sobic005G231900 Sobic005G231900 Sobic003G303300--Sobic005G231900 Sobic004G101900 Sobic004G101900 Sobic003G303300--Sobic004G101900 Sobic001G360600 Sobic001G360600 Sobic003G303300--Sobic001G360600 Sobic009G234800 Sobic009G234800 Sobic003G303300--Sobic009G234800 Sobic005G215900 Sobic005G215900 Sobic003G303300--Sobic005G215900 Sobic006G192700 Sobic006G192700 Sobic003G303300--Sobic006G192700 Sobic003G257000 Sobic003G257000 Sobic003G303300--Sobic003G257000 Sobic005G079900--Sobic004G101900 Sobic005G079900--Sobic009G234800 Sobic005G079900--Sobic005G231900 Sobic005G079900--Sobic003G303300 Sobic001G488500 Sobic001G488500 Sobic005G079900--Sobic001G488500 Sobic001G512800 Sobic001G512800 Sobic005G079900--Sobic001G512800 Sobic002G215700 Sobic002G215700 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic004G246200 Sobic004G246200 Sobic005G079900--Sobic004G246200 Sobic001G408200--Sobic003G303300 Sobic001G408200--Sobic005G079900 Sobic001G474700 Sobic001G474700 Sobic001G408200--Sobic001G474700 Sobic001G397400 Sobic001G397400 Sobic001G408200--Sobic001G397400 Sobic001G156100 Sobic001G156100 Sobic001G408200--Sobic001G156100 Sobic003G005600 Sobic003G005600 Sobic001G408200--Sobic003G005600 Sobic001G408200--Sobic004G101900 Sobic001G224600 Sobic001G224600 Sobic001G408200--Sobic001G224600 Sobic002G304000 Sobic002G304000 Sobic001G408200--Sobic002G304000 Sobic004G162400 Sobic004G162400 Sobic005G231900--Sobic004G162400 Sobic005G231900--Sobic001G488500 Sobic005G231900--Sobic005G079900 Sobic005G231900--Sobic004G101900 Sobic005G216000 Sobic005G216000 Sobic005G231900--Sobic005G216000 Sobic004G236600 Sobic004G236600 Sobic005G231900--Sobic004G236600 Sobic005G231900--Sobic002G304000 Sobic002G322900 Sobic002G322900 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic004G101900--Sobic002G304000 Sobic004G101900--Sobic002G215700 Sobic001G325200 Sobic001G325200 Sobic004G101900--Sobic001G325200 Sobic009G226300 Sobic009G226300 Sobic004G101900--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic003G148800 Sobic003G148800 Sobic004G101900--Sobic003G148800 Sobic004G124200 Sobic004G124200 Sobic004G101900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic004G101900--Sobic001G015500 Sobic001G360600--Sobic003G303300 Sobic002G381300 Sobic002G381300 Sobic001G360600--Sobic002G381300 Sobic004G102400 Sobic004G102400 Sobic001G360600--Sobic004G102400 Sobic002G249000 Sobic002G249000 Sobic001G360600--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic001G360600--Sobic003G333400 Sobic001G360600--Sobic006G192700 Sobic003G009100 Sobic003G009100 Sobic001G360600--Sobic003G009100 Sobic005G150800 Sobic005G150800 Sobic001G360600--Sobic005G150800 Sobic003G098000 Sobic003G098000 Sobic001G360600--Sobic003G098000 Sobic009G234800--Sobic005G079900 Sobic003G226200 Sobic003G226200 Sobic009G234800--Sobic003G226200 Sobic006G119200 Sobic006G119200 Sobic009G234800--Sobic006G119200 Sobic009G234800--Sobic005G231900 Sobic009G234800--Sobic001G488500 Sobic009G234800--Sobic001G512800 Sobic009G234800--Sobic004G246200 Sobic010G016400 Sobic010G016400 Sobic009G234800--Sobic010G016400 Sobic007G041400 Sobic007G041400 Sobic009G234800--Sobic007G041400 Sobic005G152100 Sobic005G152100 Sobic005G215900--Sobic005G152100 Sobic005G215900--Sobic004G236600 Sobic005G215900--Sobic002G381300 Sobic005G215900--Sobic005G216000 Sobic005G215900--Sobic001G488500 Sobic008G024400 Sobic008G024400 Sobic005G215900--Sobic008G024400 Sobic005G215900--Sobic002G304000 Sobic003G149200 Sobic003G149200 Sobic005G215900--Sobic003G149200 Sobic001G249300 Sobic001G249300 Sobic005G215900--Sobic001G249300 Sobic001G057800 Sobic001G057800 Sobic006G192700--Sobic001G057800 Sobic010G064600 Sobic010G064600 Sobic006G192700--Sobic010G064600 Sobic008G093000 Sobic008G093000 Sobic006G192700--Sobic008G093000 Sobic004G006200 Sobic004G006200 Sobic006G192700--Sobic004G006200 Sobic001G003000 Sobic001G003000 Sobic006G192700--Sobic001G003000 Sobic009G207000 Sobic009G207000 Sobic006G192700--Sobic009G207000 Sobic006G192700--Sobic003G009100 Sobic005G139400 Sobic005G139400 Sobic006G192700--Sobic005G139400 Sobic002G244100 Sobic002G244100 Sobic006G192700--Sobic002G244100 Sobic004G167400 Sobic004G167400 Sobic003G257000--Sobic004G167400 Sobic002G385900 Sobic002G385900 Sobic003G257000--Sobic002G385900 Sobic001G199100 Sobic001G199100 Sobic003G257000--Sobic001G199100 Sobic003G257000--Sobic006G192700 Sobic002G352700 Sobic002G352700 Sobic003G257000--Sobic002G352700 Sobic004G119200 Sobic004G119200 Sobic003G257000--Sobic004G119200 Sobic010G229400 Sobic010G229400 Sobic003G257000--Sobic010G229400 Sobic002G166900 Sobic002G166900 Sobic003G257000--Sobic002G166900 Sobic003G257000--Sobic008G093000
Octagon: transcription factors


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