Gene annotation
Transcriptome id Sobic.003G257000.1
Synonym Sb03g031180
Functional annotation THAP domain-containing protein 4, putative, expressed
UniProt C5XGQ2
Pfam PF08768
Panther DB PTHR15854
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79260 : -
RAP-DB (Rice) LOC_Os01g48760.1 : THAP domain-containing protein 4, putative, expressed
MaizeGDB (Corn) Zm00025a028052
Brachypodium KQK09191 , KQK09192
Barley HORVU3Hr1G062600.3 , HORVU3Hr1G062600.2 , HORVU3Hr1G062600.1 , HORVU3Hr1G062600.6 , HORVU3Hr1G062600.5 , HORVU3Hr1G062600.4
Wheat TraesCS3D02G268100 , TraesCS3B02G302400 , TraesCS3A02G268000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G167400 expressed protein -
2 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
3 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
4 Sobic.006G192700 expressed protein -
5 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
6 Sobic.004G119200 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
7 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
8 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
9 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
10 Sobic.009G225000 transmembrane protein 93, putative, expressed -
11 Sobic.003G116900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
12 Sobic.001G058100 thioredoxin, putative, expressed -
13 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic
14 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
15 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
16 Sobic.003G087000 expressed protein -
17 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
18 Sobic.001G408900 OsPDIL5-1 protein disulfide isomerase PDIL5-1, expressed -
19 Sobic.007G098200 - -
20 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2


Gene co-expression network
sample Sobic003G257000 Sobic003G257000 Sobic004G167400 Sobic004G167400 Sobic003G257000--Sobic004G167400 Sobic002G385900 Sobic002G385900 Sobic003G257000--Sobic002G385900 Sobic001G199100 Sobic001G199100 Sobic003G257000--Sobic001G199100 Sobic006G192700 Sobic006G192700 Sobic003G257000--Sobic006G192700 Sobic002G352700 Sobic002G352700 Sobic003G257000--Sobic002G352700 Sobic004G119200 Sobic004G119200 Sobic003G257000--Sobic004G119200 Sobic010G229400 Sobic010G229400 Sobic003G257000--Sobic010G229400 Sobic002G166900 Sobic002G166900 Sobic003G257000--Sobic002G166900 Sobic008G093000 Sobic008G093000 Sobic003G257000--Sobic008G093000 Sobic010G000900 Sobic010G000900 Sobic004G167400--Sobic010G000900 Sobic004G167400--Sobic002G166900 Sobic001G329100 Sobic001G329100 Sobic004G167400--Sobic001G329100 Sobic004G167400--Sobic003G257000 Sobic010G253800 Sobic010G253800 Sobic004G167400--Sobic010G253800 Sobic004G167400--Sobic002G352700 Sobic003G117900 Sobic003G117900 Sobic004G167400--Sobic003G117900 Sobic001G057800 Sobic001G057800 Sobic004G167400--Sobic001G057800 Sobic004G167400--Sobic010G229400 Sobic009G135600 Sobic009G135600 Sobic002G385900--Sobic009G135600 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic001G323000 Sobic001G323000 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic003G012200 Sobic003G012200 Sobic001G199100--Sobic003G012200 Sobic004G275700 Sobic004G275700 Sobic001G199100--Sobic004G275700 Sobic009G075800 Sobic009G075800 Sobic001G199100--Sobic009G075800 Sobic001G199100--Sobic009G207000 Sobic001G199100--Sobic008G093000 Sobic001G091300 Sobic001G091300 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic001G199100--Sobic004G348300 Sobic006G192700--Sobic001G057800 Sobic010G064600 Sobic010G064600 Sobic006G192700--Sobic010G064600 Sobic006G192700--Sobic008G093000 Sobic004G006200 Sobic004G006200 Sobic006G192700--Sobic004G006200 Sobic001G003000 Sobic001G003000 Sobic006G192700--Sobic001G003000 Sobic006G192700--Sobic009G207000 Sobic003G009100 Sobic003G009100 Sobic006G192700--Sobic003G009100 Sobic005G139400 Sobic005G139400 Sobic006G192700--Sobic005G139400 Sobic002G244100 Sobic002G244100 Sobic006G192700--Sobic002G244100 Sobic010G168600 Sobic010G168600 Sobic002G352700--Sobic010G168600 Sobic002G352700--Sobic010G253800 Sobic002G352700--Sobic001G057800 Sobic002G256300 Sobic002G256300 Sobic002G352700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic002G352700--Sobic003G007500 Sobic004G203100 Sobic004G203100 Sobic002G352700--Sobic004G203100 Sobic010G083700 Sobic010G083700 Sobic002G352700--Sobic010G083700 Sobic009G246950 Sobic009G246950 Sobic002G352700--Sobic009G246950 Sobic008G180900 Sobic008G180900 Sobic002G352700--Sobic008G180900 Sobic004G119200--Sobic003G012200 Sobic001G512300 Sobic001G512300 Sobic004G119200--Sobic001G512300 Sobic006G249700 Sobic006G249700 Sobic004G119200--Sobic006G249700 Sobic004G119200--Sobic008G093000 Sobic001G047400 Sobic001G047400 Sobic004G119200--Sobic001G047400 Sobic004G119200--Sobic001G199100 Sobic004G119200--Sobic004G348300 Sobic004G119200--Sobic001G091300 Sobic004G119200--Sobic004G275700 Sobic003G139800 Sobic003G139800 Sobic010G229400--Sobic003G139800 Sobic006G215700 Sobic006G215700 Sobic010G229400--Sobic006G215700 Sobic009G222500 Sobic009G222500 Sobic010G229400--Sobic009G222500 Sobic010G229400--Sobic008G093000 Sobic010G164000 Sobic010G164000 Sobic010G229400--Sobic010G164000 Sobic010G229400--Sobic002G385900 Sobic010G229400--Sobic010G000900 Sobic010G229400--Sobic002G166900 Sobic010G229400--Sobic001G199100 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic004G067100 Sobic004G067100 Sobic002G166900--Sobic004G067100 Sobic001G283200 Sobic001G283200 Sobic002G166900--Sobic001G283200 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic002G166900--Sobic004G167400 Sobic004G321900 Sobic004G321900 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic008G093000--Sobic001G199100 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic003G312200 Sobic003G312200 Sobic008G093000--Sobic003G312200 Sobic008G093000--Sobic004G275700 Sobic008G093000--Sobic010G229400 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic008G093000--Sobic002G244100
Octagon: transcription factors


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