Gene annotation
Transcriptome id Sobic.003G087000.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q251
Pfam PF10151
Panther DB PTHR13448
NCBI CDD KOG4467; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G23170 : Protein of unknown function DUF2359, transmembrane
RAP-DB (Rice) LOC_Os01g03760.1 : expressed protein
MaizeGDB (Corn) Zm00025a023636 , Zm00025a035544
Brachypodium KQK02518
Barley -
Wheat TraesCS3D02G037100 , TraesCS3B02G039900
Populus -


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cDNA sequences
Sobic.003G087000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
2 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
3 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
4 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
5 Sobic.007G075500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
6 Sobic.009G225000 transmembrane protein 93, putative, expressed -
7 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
8 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
9 Sobic.009G139800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
10 Sobic.010G184300 glycosyltransferase family protein, putative, expressed K00771: protein xylosyltransferase
11 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
12 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
13 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
14 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
15 Sobic.004G181900 expressed protein -
16 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
17 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
18 Sobic.005G034300 peptidyl-prolyl isomerase, putative, expressed -
19 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
20 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9


Gene co-expression network
sample Sobic003G087000 Sobic003G087000 Sobic010G064600 Sobic010G064600 Sobic003G087000--Sobic010G064600 Sobic010G261600 Sobic010G261600 Sobic003G087000--Sobic010G261600 Sobic006G114400 Sobic006G114400 Sobic003G087000--Sobic006G114400 Sobic008G093000 Sobic008G093000 Sobic003G087000--Sobic008G093000 Sobic007G075500 Sobic007G075500 Sobic003G087000--Sobic007G075500 Sobic009G225000 Sobic009G225000 Sobic003G087000--Sobic009G225000 Sobic004G228800 Sobic004G228800 Sobic003G087000--Sobic004G228800 Sobic003G312200 Sobic003G312200 Sobic003G087000--Sobic003G312200 Sobic009G139800 Sobic009G139800 Sobic003G087000--Sobic009G139800 Sobic010G064600--Sobic003G087000 Sobic010G064600--Sobic008G093000 Sobic010G064600--Sobic010G261600 Sobic010G064600--Sobic004G228800 Sobic010G184300 Sobic010G184300 Sobic010G064600--Sobic010G184300 Sobic006G281800 Sobic006G281800 Sobic010G064600--Sobic006G281800 Sobic009G072700 Sobic009G072700 Sobic010G064600--Sobic009G072700 Sobic001G089800 Sobic001G089800 Sobic010G064600--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic010G064600--Sobic001G003000 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic006G114400--Sobic009G139800 Sobic003G009300 Sobic003G009300 Sobic006G114400--Sobic003G009300 Sobic006G114400--Sobic003G087000 Sobic002G113800 Sobic002G113800 Sobic006G114400--Sobic002G113800 Sobic004G335000 Sobic004G335000 Sobic006G114400--Sobic004G335000 Sobic002G141700 Sobic002G141700 Sobic006G114400--Sobic002G141700 Sobic007G142500 Sobic007G142500 Sobic006G114400--Sobic007G142500 Sobic004G194900 Sobic004G194900 Sobic006G114400--Sobic004G194900 Sobic006G114400--Sobic009G225000 Sobic001G199100 Sobic001G199100 Sobic008G093000--Sobic001G199100 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic008G093000--Sobic003G312200 Sobic008G093000--Sobic004G275700 Sobic010G229400 Sobic010G229400 Sobic008G093000--Sobic010G229400 Sobic009G207000 Sobic009G207000 Sobic008G093000--Sobic009G207000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100 Sobic006G260500 Sobic006G260500 Sobic007G075500--Sobic006G260500 Sobic010G223300 Sobic010G223300 Sobic007G075500--Sobic010G223300 Sobic007G075500--Sobic002G008800 Sobic008G003700 Sobic008G003700 Sobic007G075500--Sobic008G003700 Sobic004G241900 Sobic004G241900 Sobic007G075500--Sobic004G241900 Sobic007G075500--Sobic003G087000 Sobic007G075500--Sobic003G338500 Sobic004G261600 Sobic004G261600 Sobic007G075500--Sobic004G261600 Sobic002G020700 Sobic002G020700 Sobic007G075500--Sobic002G020700 Sobic009G225000--Sobic006G281800 Sobic001G283200 Sobic001G283200 Sobic009G225000--Sobic001G283200 Sobic009G225000--Sobic004G194900 Sobic004G181900 Sobic004G181900 Sobic009G225000--Sobic004G181900 Sobic001G461900 Sobic001G461900 Sobic009G225000--Sobic001G461900 Sobic009G225000--Sobic007G142500 Sobic001G460600 Sobic001G460600 Sobic009G225000--Sobic001G460600 Sobic004G206700 Sobic004G206700 Sobic009G225000--Sobic004G206700 Sobic003G349300 Sobic003G349300 Sobic009G225000--Sobic003G349300 Sobic004G228800--Sobic004G261600 Sobic004G228800--Sobic010G261600 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic009G139800--Sobic006G114400 Sobic001G109300 Sobic001G109300 Sobic009G139800--Sobic001G109300 Sobic008G113600 Sobic008G113600 Sobic009G139800--Sobic008G113600 Sobic003G428200 Sobic003G428200 Sobic009G139800--Sobic003G428200 Sobic009G139800--Sobic002G141700 Sobic001G058100 Sobic001G058100 Sobic009G139800--Sobic001G058100 Sobic009G139800--Sobic003G087000 Sobic003G280300 Sobic003G280300 Sobic009G139800--Sobic003G280300 Sobic001G010700 Sobic001G010700 Sobic009G139800--Sobic001G010700
Octagon: transcription factors


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