Gene annotation
Transcriptome id Sobic.008G093000.1
Synonym GCN1, ATGCN1, Sb08g012980
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C5YNK1
Pfam PF12848 PF00005
Panther DB PTHR19211 PTHR19211:SF52
NCBI CDD -
KEGG Orthology K06185; ATP-binding cassette, subfamily F, member 2
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G60790 : ABC transporter family protein
RAP-DB (Rice) LOC_Os08g45010.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a054141 , Zm00025a030510 , Zm00025a024904
Brachypodium KQJ94694
Barley HORVU7Hr1G069230.6 , HORVU7Hr1G069230.5 , HORVU7Hr1G069230.4 , HORVU7Hr1G069230.3 , HORVU7Hr1G069230.2 , HORVU7Hr1G069230.1
Wheat TraesCS7A02G291300 , TraesCS7D02G290800 , TraesCS7D02G290800 , TraesCS7B02G181800 , TraesCS7B02G181800
Populus -


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cDNA sequences
Sobic.008G093000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
2 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
3 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
4 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
5 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
6 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
7 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
8 Sobic.003G087000 expressed protein -
9 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
11 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
12 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
13 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
14 Sobic.004G119200 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
15 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
16 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
17 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
18 Sobic.001G107600 - K18328: lariat debranching enzyme
19 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
20 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -


Gene co-expression network
sample Sobic008G093000 Sobic008G093000 Sobic001G199100 Sobic001G199100 Sobic008G093000--Sobic001G199100 Sobic010G064600 Sobic010G064600 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic003G312200 Sobic003G312200 Sobic008G093000--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic008G093000--Sobic004G275700 Sobic010G229400 Sobic010G229400 Sobic008G093000--Sobic010G229400 Sobic009G207000 Sobic009G207000 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100 Sobic003G012200 Sobic003G012200 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic009G075800 Sobic009G075800 Sobic001G199100--Sobic009G075800 Sobic001G199100--Sobic009G207000 Sobic001G199100--Sobic008G093000 Sobic001G091300 Sobic001G091300 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic001G199100--Sobic004G348300 Sobic010G064600--Sobic003G087000 Sobic010G064600--Sobic008G093000 Sobic010G261600 Sobic010G261600 Sobic010G064600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic010G064600--Sobic004G228800 Sobic010G184300 Sobic010G184300 Sobic010G064600--Sobic010G184300 Sobic006G281800 Sobic006G281800 Sobic010G064600--Sobic006G281800 Sobic009G072700 Sobic009G072700 Sobic010G064600--Sobic009G072700 Sobic001G089800 Sobic001G089800 Sobic010G064600--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic010G064600--Sobic001G003000 Sobic001G438600 Sobic001G438600 Sobic001G301700--Sobic001G438600 Sobic001G207400 Sobic001G207400 Sobic001G301700--Sobic001G207400 Sobic001G015500 Sobic001G015500 Sobic001G301700--Sobic001G015500 Sobic002G266000 Sobic002G266000 Sobic001G301700--Sobic002G266000 Sobic001G301700--Sobic008G093000 Sobic002G270500 Sobic002G270500 Sobic001G301700--Sobic002G270500 Sobic002G430000 Sobic002G430000 Sobic001G301700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G301700--Sobic002G111000 Sobic010G205200 Sobic010G205200 Sobic001G301700--Sobic010G205200 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic003G312200--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic009G228700 Sobic009G228700 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic004G275700--Sobic001G199100 Sobic004G275700--Sobic001G091300 Sobic004G275700--Sobic009G075800 Sobic002G262900 Sobic002G262900 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic004G275700--Sobic003G012200 Sobic003G139800 Sobic003G139800 Sobic010G229400--Sobic003G139800 Sobic006G215700 Sobic006G215700 Sobic010G229400--Sobic006G215700 Sobic009G222500 Sobic009G222500 Sobic010G229400--Sobic009G222500 Sobic010G229400--Sobic008G093000 Sobic010G164000 Sobic010G164000 Sobic010G229400--Sobic010G164000 Sobic002G385900 Sobic002G385900 Sobic010G229400--Sobic002G385900 Sobic010G000900 Sobic010G000900 Sobic010G229400--Sobic010G000900 Sobic002G166900 Sobic002G166900 Sobic010G229400--Sobic002G166900 Sobic010G229400--Sobic001G199100 Sobic009G207000--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G207000--Sobic004G066200 Sobic009G207000--Sobic001G199100 Sobic009G207000--Sobic001G323000 Sobic009G207000--Sobic001G085100 Sobic006G249700 Sobic006G249700 Sobic009G207000--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G207000--Sobic006G148200 Sobic009G207000--Sobic010G000900 Sobic009G207000--Sobic003G012200 Sobic003G087000--Sobic010G064600 Sobic003G087000--Sobic010G261600 Sobic006G114400 Sobic006G114400 Sobic003G087000--Sobic006G114400 Sobic003G087000--Sobic008G093000 Sobic007G075500 Sobic007G075500 Sobic003G087000--Sobic007G075500 Sobic009G225000 Sobic009G225000 Sobic003G087000--Sobic009G225000 Sobic003G087000--Sobic004G228800 Sobic003G087000--Sobic003G312200 Sobic009G139800 Sobic009G139800 Sobic003G087000--Sobic009G139800 Sobic009G167700 Sobic009G167700 Sobic002G244100--Sobic009G167700 Sobic002G244100--Sobic001G089800 Sobic002G244100--Sobic008G093000 Sobic004G225100 Sobic004G225100 Sobic002G244100--Sobic004G225100 Sobic003G354400 Sobic003G354400 Sobic002G244100--Sobic003G354400 Sobic002G244100--Sobic010G064600 Sobic004G167400 Sobic004G167400 Sobic002G244100--Sobic004G167400 Sobic001G334600 Sobic001G334600 Sobic002G244100--Sobic001G334600 Sobic009G126900 Sobic009G126900 Sobic002G244100--Sobic009G126900
Octagon: transcription factors


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