Gene annotation
Transcriptome id Sobic.010G064600.2,Sobic.010G064600.1
Synonym DAR1, Sb10g005570
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
LIM domain-containing protein, putative, expressed
UniProt C5Z5H9
Pfam PF02809 PF00412 PF12315
Panther DB PTHR24209 PTHR24209:SF10
NCBI CDD KOG1703; Adaptor protein Enigma and related PDZ-LIM proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G19270 : DA1
RAP-DB (Rice) LOC_Os06g08400.1,LOC_Os06g08400.2 : LIM domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a041131
Brachypodium KQJ81504 , KQJ81505 , KQJ92265 , KQJ92267 , KQJ92266 , KQJ92268
Barley HORVU2Hr1G002700.20 , HORVU2Hr1G002700.5 , HORVU2Hr1G002700.4 , HORVU2Hr1G002700.7 , HORVU2Hr1G002700.6 , HORVU2Hr1G002700.1 , HORVU2Hr1G002700.3 , HORVU2Hr1G002700.2 , HORVU2Hr1G002700.9 , HORVU2Hr1G002700.8 , HORVU2Hr1G002700.11 , HORVU2Hr1G002700.10 , HORVU2Hr1G002700.13 , HORVU2Hr1G002700.12 , HORVU2Hr1G002700.17 , HORVU2Hr1G002700.16 , HORVU2Hr1G002700.19 , HORVU2Hr1G002700.18 , HORVU7Hr1G118120.1 , HORVU2Hr1G002700.15 , HORVU2Hr1G002700.14
Wheat TraesCS2B02G007700 , TraesCSU02G007800 , TraesCS2D02G016900 , TraesCS2D02G016900 , TraesCS2D02G016500
Populus PNT26851 , PNT26852 , PNT26855 , PNT26854 , PNT26857 , PNT26856 , PNT26858 , PNT26860 , PNT36473 , PNT36476 , PNT36474 , PNT36475


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G087000 expressed protein -
2 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
3 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
4 Sobic.004G228800 LMBR1 integral membrane protein, putative, expressed -
5 Sobic.010G184300 glycosyltransferase family protein, putative, expressed K00771: protein xylosyltransferase
6 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
7 Sobic.009G072700 O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
8 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
9 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
10 Sobic.006G217300 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12448: UXE, UDP-arabinose 4-epimerase
11 Sobic.009G225000 transmembrane protein 93, putative, expressed -
12 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
13 Sobic.006G232000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
14 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
15 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.006G192700 expressed protein -
17 Sobic.002G431000 transporter, putative, expressed -
18 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
19 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
20 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -


Gene co-expression network
sample Sobic010G064600 Sobic010G064600 Sobic003G087000 Sobic003G087000 Sobic010G064600--Sobic003G087000 Sobic008G093000 Sobic008G093000 Sobic010G064600--Sobic008G093000 Sobic010G261600 Sobic010G261600 Sobic010G064600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic010G064600--Sobic004G228800 Sobic010G184300 Sobic010G184300 Sobic010G064600--Sobic010G184300 Sobic006G281800 Sobic006G281800 Sobic010G064600--Sobic006G281800 Sobic009G072700 Sobic009G072700 Sobic010G064600--Sobic009G072700 Sobic001G089800 Sobic001G089800 Sobic010G064600--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic010G064600--Sobic001G003000 Sobic003G087000--Sobic010G064600 Sobic003G087000--Sobic010G261600 Sobic006G114400 Sobic006G114400 Sobic003G087000--Sobic006G114400 Sobic003G087000--Sobic008G093000 Sobic007G075500 Sobic007G075500 Sobic003G087000--Sobic007G075500 Sobic009G225000 Sobic009G225000 Sobic003G087000--Sobic009G225000 Sobic003G087000--Sobic004G228800 Sobic003G312200 Sobic003G312200 Sobic003G087000--Sobic003G312200 Sobic009G139800 Sobic009G139800 Sobic003G087000--Sobic009G139800 Sobic001G199100 Sobic001G199100 Sobic008G093000--Sobic001G199100 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic008G093000--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic008G093000--Sobic004G275700 Sobic010G229400 Sobic010G229400 Sobic008G093000--Sobic010G229400 Sobic009G207000 Sobic009G207000 Sobic008G093000--Sobic009G207000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic009G228700 Sobic009G228700 Sobic010G261600--Sobic009G228700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic004G261600 Sobic004G261600 Sobic004G228800--Sobic004G261600 Sobic004G228800--Sobic010G261600 Sobic004G228800--Sobic004G323700 Sobic010G278200 Sobic010G278200 Sobic004G228800--Sobic010G278200 Sobic004G236200 Sobic004G236200 Sobic004G228800--Sobic004G236200 Sobic006G131000 Sobic006G131000 Sobic004G228800--Sobic006G131000 Sobic005G177700 Sobic005G177700 Sobic004G228800--Sobic005G177700 Sobic007G056600 Sobic007G056600 Sobic004G228800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic004G228800--Sobic003G126300 Sobic002G431000 Sobic002G431000 Sobic010G184300--Sobic002G431000 Sobic010G184300--Sobic004G228800 Sobic010G184300--Sobic005G177700 Sobic010G184300--Sobic010G064600 Sobic010G184300--Sobic004G236200 Sobic003G270600 Sobic003G270600 Sobic010G184300--Sobic003G270600 Sobic010G184300--Sobic003G087000 Sobic004G241900 Sobic004G241900 Sobic010G184300--Sobic004G241900 Sobic007G056100 Sobic007G056100 Sobic010G184300--Sobic007G056100 Sobic006G281800--Sobic009G225000 Sobic003G349300 Sobic003G349300 Sobic006G281800--Sobic003G349300 Sobic001G283200 Sobic001G283200 Sobic006G281800--Sobic001G283200 Sobic004G181900 Sobic004G181900 Sobic006G281800--Sobic004G181900 Sobic001G206900 Sobic001G206900 Sobic006G281800--Sobic001G206900 Sobic002G385900 Sobic002G385900 Sobic006G281800--Sobic002G385900 Sobic004G206700 Sobic004G206700 Sobic006G281800--Sobic004G206700 Sobic006G281800--Sobic010G064600 Sobic006G281800--Sobic003G312200 Sobic009G072700--Sobic010G064600 Sobic006G260500 Sobic006G260500 Sobic009G072700--Sobic006G260500 Sobic009G072700--Sobic005G177700 Sobic009G072700--Sobic008G093000 Sobic009G072700--Sobic007G075500 Sobic009G072700--Sobic001G301700 Sobic009G072700--Sobic010G261600 Sobic003G365300 Sobic003G365300 Sobic009G072700--Sobic003G365300 Sobic009G072700--Sobic004G228800 Sobic001G089800--Sobic001G003000 Sobic004G341200 Sobic004G341200 Sobic001G089800--Sobic004G341200 Sobic009G193700 Sobic009G193700 Sobic001G089800--Sobic009G193700 Sobic006G271200 Sobic006G271200 Sobic001G089800--Sobic006G271200 Sobic009G167700 Sobic009G167700 Sobic001G089800--Sobic009G167700 Sobic001G089800--Sobic002G244100 Sobic004G102400 Sobic004G102400 Sobic001G089800--Sobic004G102400 Sobic001G089800--Sobic010G064600 Sobic003G354400 Sobic003G354400 Sobic001G089800--Sobic003G354400 Sobic001G003000--Sobic006G271200 Sobic001G003000--Sobic001G089800 Sobic009G126900 Sobic009G126900 Sobic001G003000--Sobic009G126900 Sobic001G003000--Sobic004G102400 Sobic006G237900 Sobic006G237900 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic010G043400 Sobic010G043400 Sobic001G003000--Sobic010G043400 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700
Octagon: transcription factors


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