Gene annotation
Transcriptome id Sobic.006G232000.1
Synonym Sb06g029980, GAUT10, LGT4
Functional annotation glycosyl transferase 8 domain containing protein, putative, expressed
UniProt C5YGR4
Pfam PF01501
Panther DB PTHR32116 PTHR32116:SF27
NCBI CDD -
KEGG Orthology K13648; alpha-1,4-galacturonosyltransferase
Gene Ontology GO:0016757; transferase activity, transferring glycosyl groups


Orthologs (automatic annotation)
TAIR AT2G20810 : galacturonosyltransferase 10
RAP-DB (Rice) LOC_Os04g54360.1 : glycosyl transferase 8 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057144 , Zm00025a018503 , Zm00025a009624
Brachypodium KQJ84844 , PNT61941
Barley HORVU2Hr1G116320.4 , HORVU2Hr1G116320.1 , HORVU2Hr1G116320.3 , HORVU2Hr1G116320.2
Wheat TraesCS2B02G558300 , TraesCS2D02G530400 , TraesCS2A02G527600
Populus -


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cDNA sequences
Sobic.006G232000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G238800 expressed protein -
2 Sobic.003G009300 methyltransferase domain containing protein, putative, expressed K06127: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase
3 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
4 Sobic.001G077900 SSA2 - 2S albumin seed storage family protein precursor, putative, expressed -
5 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
6 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
8 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
9 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
10 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
11 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
12 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
13 Sobic.002G431000 transporter, putative, expressed -
14 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
15 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
16 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
17 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
18 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
19 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
20 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G232000 Sobic006G232000 Sobic009G238800 Sobic009G238800 Sobic006G232000--Sobic009G238800 Sobic003G009300 Sobic003G009300 Sobic006G232000--Sobic003G009300 Sobic006G148200 Sobic006G148200 Sobic006G232000--Sobic006G148200 Sobic001G077900 Sobic001G077900 Sobic006G232000--Sobic001G077900 Sobic003G270600 Sobic003G270600 Sobic006G232000--Sobic003G270600 Sobic004G010900 Sobic004G010900 Sobic006G232000--Sobic004G010900 Sobic010G261600 Sobic010G261600 Sobic006G232000--Sobic010G261600 Sobic010G064600 Sobic010G064600 Sobic006G232000--Sobic010G064600 Sobic002G294200 Sobic002G294200 Sobic006G232000--Sobic002G294200 Sobic010G080200 Sobic010G080200 Sobic009G238800--Sobic010G080200 Sobic009G238800--Sobic006G232000 Sobic006G217700 Sobic006G217700 Sobic009G238800--Sobic006G217700 Sobic001G033500 Sobic001G033500 Sobic009G238800--Sobic001G033500 Sobic002G376300 Sobic002G376300 Sobic009G238800--Sobic002G376300 Sobic009G238800--Sobic006G148200 Sobic001G048700 Sobic001G048700 Sobic009G238800--Sobic001G048700 Sobic001G067900 Sobic001G067900 Sobic009G238800--Sobic001G067900 Sobic001G206900 Sobic001G206900 Sobic009G238800--Sobic001G206900 Sobic006G114400 Sobic006G114400 Sobic003G009300--Sobic006G114400 Sobic003G009300--Sobic001G077900 Sobic003G009300--Sobic006G232000 Sobic001G220900 Sobic001G220900 Sobic003G009300--Sobic001G220900 Sobic001G443200 Sobic001G443200 Sobic003G009300--Sobic001G443200 Sobic007G176200 Sobic007G176200 Sobic003G009300--Sobic007G176200 Sobic001G109300 Sobic001G109300 Sobic003G009300--Sobic001G109300 Sobic002G141700 Sobic002G141700 Sobic003G009300--Sobic002G141700 Sobic001G444300 Sobic001G444300 Sobic003G009300--Sobic001G444300 Sobic004G274400 Sobic004G274400 Sobic006G148200--Sobic004G274400 Sobic001G085100 Sobic001G085100 Sobic006G148200--Sobic001G085100 Sobic006G034000 Sobic006G034000 Sobic006G148200--Sobic006G034000 Sobic001G323000 Sobic001G323000 Sobic006G148200--Sobic001G323000 Sobic009G228700 Sobic009G228700 Sobic006G148200--Sobic009G228700 Sobic006G148200--Sobic001G033500 Sobic006G148200--Sobic001G206900 Sobic010G000900 Sobic010G000900 Sobic006G148200--Sobic010G000900 Sobic006G148200--Sobic001G048700 Sobic001G077900--Sobic001G443200 Sobic001G077900--Sobic002G141700 Sobic003G196200 Sobic003G196200 Sobic001G077900--Sobic003G196200 Sobic001G161700 Sobic001G161700 Sobic001G077900--Sobic001G161700 Sobic001G077900--Sobic003G009300 Sobic001G490500 Sobic001G490500 Sobic001G077900--Sobic001G490500 Sobic006G029000 Sobic006G029000 Sobic001G077900--Sobic006G029000 Sobic004G000100 Sobic004G000100 Sobic001G077900--Sobic004G000100 Sobic001G077900--Sobic006G232000 Sobic004G236200 Sobic004G236200 Sobic003G270600--Sobic004G236200 Sobic003G394200 Sobic003G394200 Sobic003G270600--Sobic003G394200 Sobic009G229600 Sobic009G229600 Sobic003G270600--Sobic009G229600 Sobic003G427600 Sobic003G427600 Sobic003G270600--Sobic003G427600 Sobic009G226400 Sobic009G226400 Sobic003G270600--Sobic009G226400 Sobic004G039600 Sobic004G039600 Sobic003G270600--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic003G270600--Sobic001G369000 Sobic009G049400 Sobic009G049400 Sobic003G270600--Sobic009G049400 Sobic004G228800 Sobic004G228800 Sobic003G270600--Sobic004G228800 Sobic004G010900--Sobic001G206900 Sobic001G458700 Sobic001G458700 Sobic004G010900--Sobic001G458700 Sobic004G082900 Sobic004G082900 Sobic004G010900--Sobic004G082900 Sobic006G252200 Sobic006G252200 Sobic004G010900--Sobic006G252200 Sobic010G205300 Sobic010G205300 Sobic004G010900--Sobic010G205300 Sobic003G261400 Sobic003G261400 Sobic004G010900--Sobic003G261400 Sobic001G338400 Sobic001G338400 Sobic004G010900--Sobic001G338400 Sobic001G283200 Sobic001G283200 Sobic004G010900--Sobic001G283200 Sobic003G349300 Sobic003G349300 Sobic004G010900--Sobic003G349300 Sobic003G338500 Sobic003G338500 Sobic010G261600--Sobic003G338500 Sobic002G303600 Sobic002G303600 Sobic010G261600--Sobic002G303600 Sobic002G008800 Sobic002G008800 Sobic010G261600--Sobic002G008800 Sobic010G261600--Sobic004G228800 Sobic004G323700 Sobic004G323700 Sobic010G261600--Sobic004G323700 Sobic002G262900 Sobic002G262900 Sobic010G261600--Sobic002G262900 Sobic010G261600--Sobic009G228700 Sobic004G275700 Sobic004G275700 Sobic010G261600--Sobic004G275700 Sobic010G020400 Sobic010G020400 Sobic010G261600--Sobic010G020400 Sobic003G087000 Sobic003G087000 Sobic010G064600--Sobic003G087000 Sobic008G093000 Sobic008G093000 Sobic010G064600--Sobic008G093000 Sobic010G064600--Sobic010G261600 Sobic010G064600--Sobic004G228800 Sobic010G184300 Sobic010G184300 Sobic010G064600--Sobic010G184300 Sobic006G281800 Sobic006G281800 Sobic010G064600--Sobic006G281800 Sobic009G072700 Sobic009G072700 Sobic010G064600--Sobic009G072700 Sobic001G089800 Sobic001G089800 Sobic010G064600--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic010G064600--Sobic001G003000 Sobic002G242500 Sobic002G242500 Sobic002G294200--Sobic002G242500 Sobic002G294200--Sobic004G274400 Sobic009G179200 Sobic009G179200 Sobic002G294200--Sobic009G179200 Sobic002G294200--Sobic001G283200 Sobic006G176600 Sobic006G176600 Sobic002G294200--Sobic006G176600 Sobic002G294200--Sobic006G148200 Sobic010G193900 Sobic010G193900 Sobic002G294200--Sobic010G193900 Sobic002G294200--Sobic006G281800 Sobic002G294200--Sobic010G064600
Octagon: transcription factors


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