Gene annotation
Transcriptome id Sobic.004G119200.1
Synonym Sb04g009940
Functional annotation splicing factor 3B subunit 5, putative, expressed
UniProt -
Pfam PF07189
Panther DB PTHR20978 PTHR20978:SF0
NCBI CDD KOG3485; Uncharacterized conserved protein
KEGG Orthology K12832; SF3B5, splicing factor 3B subunit 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14342 : Splicing factor 3B subunit 5/RDS3 complex subunit 10
RAP-DB (Rice) LOC_Os08g34480.1 : splicing factor 3B subunit 5, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK23171
Barley HORVU1Hr1G078320.1 , HORVU1Hr1G078320.3 , HORVU1Hr1G078320.2 , HORVU1Hr1G078320.4
Wheat -
Populus -


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cDNA sequences
Sobic.004G119200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
2 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
3 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
4 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
5 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
6 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
7 Sobic.004G348300 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
8 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
9 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
10 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
11 Sobic.010G000900 spotted leaf 11, putative, expressed -
12 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
13 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
14 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
15 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
16 Sobic.002G141300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
18 Sobic.009G228700 expressed protein -
19 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
20 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -


Gene co-expression network
sample Sobic004G119200 Sobic004G119200 Sobic003G012200 Sobic003G012200 Sobic004G119200--Sobic003G012200 Sobic001G512300 Sobic001G512300 Sobic004G119200--Sobic001G512300 Sobic006G249700 Sobic006G249700 Sobic004G119200--Sobic006G249700 Sobic008G093000 Sobic008G093000 Sobic004G119200--Sobic008G093000 Sobic001G047400 Sobic001G047400 Sobic004G119200--Sobic001G047400 Sobic001G199100 Sobic001G199100 Sobic004G119200--Sobic001G199100 Sobic004G348300 Sobic004G348300 Sobic004G119200--Sobic004G348300 Sobic001G091300 Sobic001G091300 Sobic004G119200--Sobic001G091300 Sobic004G275700 Sobic004G275700 Sobic004G119200--Sobic004G275700 Sobic003G012200--Sobic001G199100 Sobic003G344900 Sobic003G344900 Sobic003G012200--Sobic003G344900 Sobic010G000900 Sobic010G000900 Sobic003G012200--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic003G012200--Sobic001G085100 Sobic003G012200--Sobic004G348300 Sobic009G075800 Sobic009G075800 Sobic003G012200--Sobic009G075800 Sobic003G012200--Sobic004G275700 Sobic009G259400 Sobic009G259400 Sobic003G012200--Sobic009G259400 Sobic003G012200--Sobic001G047400 Sobic001G512300--Sobic001G091300 Sobic006G101700 Sobic006G101700 Sobic001G512300--Sobic006G101700 Sobic002G281300 Sobic002G281300 Sobic001G512300--Sobic002G281300 Sobic001G512300--Sobic001G085100 Sobic009G207000 Sobic009G207000 Sobic001G512300--Sobic009G207000 Sobic001G360200 Sobic001G360200 Sobic001G512300--Sobic001G360200 Sobic009G123600 Sobic009G123600 Sobic001G512300--Sobic009G123600 Sobic004G066200 Sobic004G066200 Sobic001G512300--Sobic004G066200 Sobic003G007500 Sobic003G007500 Sobic001G512300--Sobic003G007500 Sobic009G228700 Sobic009G228700 Sobic006G249700--Sobic009G228700 Sobic006G249700--Sobic009G207000 Sobic006G249700--Sobic004G348300 Sobic003G312200 Sobic003G312200 Sobic006G249700--Sobic003G312200 Sobic002G352600 Sobic002G352600 Sobic006G249700--Sobic002G352600 Sobic006G249700--Sobic004G275700 Sobic001G323000 Sobic001G323000 Sobic006G249700--Sobic001G323000 Sobic006G148200 Sobic006G148200 Sobic006G249700--Sobic006G148200 Sobic009G138100 Sobic009G138100 Sobic006G249700--Sobic009G138100 Sobic008G093000--Sobic001G199100 Sobic010G064600 Sobic010G064600 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic008G093000--Sobic003G312200 Sobic008G093000--Sobic004G275700 Sobic010G229400 Sobic010G229400 Sobic008G093000--Sobic010G229400 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100 Sobic002G116900 Sobic002G116900 Sobic001G047400--Sobic002G116900 Sobic009G165800 Sobic009G165800 Sobic001G047400--Sobic009G165800 Sobic001G047400--Sobic010G000900 Sobic001G047400--Sobic001G085100 Sobic010G251000 Sobic010G251000 Sobic001G047400--Sobic010G251000 Sobic003G015900 Sobic003G015900 Sobic001G047400--Sobic003G015900 Sobic001G051200 Sobic001G051200 Sobic001G047400--Sobic001G051200 Sobic001G261436 Sobic001G261436 Sobic001G047400--Sobic001G261436 Sobic001G047400--Sobic009G228700 Sobic001G199100--Sobic003G012200 Sobic001G199100--Sobic004G275700 Sobic001G199100--Sobic009G075800 Sobic001G199100--Sobic009G207000 Sobic001G199100--Sobic008G093000 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic001G199100--Sobic004G348300 Sobic004G348300--Sobic003G012200 Sobic004G348300--Sobic003G344900 Sobic004G348300--Sobic001G199100 Sobic004G348300--Sobic002G352600 Sobic004G348300--Sobic006G249700 Sobic004G006200 Sobic004G006200 Sobic004G348300--Sobic004G006200 Sobic002G059300 Sobic002G059300 Sobic004G348300--Sobic002G059300 Sobic009G217100 Sobic009G217100 Sobic004G348300--Sobic009G217100 Sobic005G004200 Sobic005G004200 Sobic004G348300--Sobic005G004200 Sobic001G091300--Sobic009G228700 Sobic001G091300--Sobic003G312200 Sobic001G091300--Sobic004G275700 Sobic001G091300--Sobic004G066200 Sobic001G091300--Sobic001G085100 Sobic001G091300--Sobic001G512300 Sobic001G091300--Sobic001G261436 Sobic001G091300--Sobic001G199100 Sobic002G303600 Sobic002G303600 Sobic001G091300--Sobic002G303600 Sobic004G275700--Sobic001G199100 Sobic004G275700--Sobic001G091300 Sobic004G275700--Sobic009G075800 Sobic002G262900 Sobic002G262900 Sobic004G275700--Sobic002G262900 Sobic001G007000 Sobic001G007000 Sobic004G275700--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic004G275700--Sobic010G020400 Sobic002G008800 Sobic002G008800 Sobic004G275700--Sobic002G008800 Sobic003G365300 Sobic003G365300 Sobic004G275700--Sobic003G365300 Sobic004G275700--Sobic003G012200
Octagon: transcription factors


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