Gene annotation
Transcriptome id Sobic.001G047400.2,Sobic.001G047400.3
Synonym SNF7.1, Sb01g004370
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt A0A1Z5S4X0
Pfam PF03357
Panther DB PTHR22761 PTHR22761:SF8
NCBI CDD KOG1656; Protein involved in glucose derepression and pre-vacuolar endosome protein sorting
KEGG Orthology K12194; CHMP4, SNF7, charged multivesicular body protein 4
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT2G19830 : SNF7 family protein
RAP-DB (Rice) LOC_Os09g09480.3,LOC_Os09g09480.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a051362 , Zm00025a038510 , Zm00025a028740 , Zm00025a008657
Brachypodium KQK11044 , KQK11043 , KQJ89638
Barley HORVU5Hr1G052710.8 , HORVU5Hr1G052710.9 , HORVU5Hr1G052710.1 , HORVU5Hr1G052710.3 , HORVU5Hr1G052710.4 , HORVU5Hr1G052710.5 , HORVU5Hr1G052710.6 , HORVU5Hr1G052710.7 , HORVU5Hr1G052710.12 , HORVU5Hr1G052710.10 , HORVU5Hr1G052710.11
Wheat TraesCS5B02G168900 , TraesCS5D02G176200 , TraesCS5A02G171400
Populus -


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cDNA sequences
Sobic.001G047400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G116900 expressed protein -
2 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
3 Sobic.010G000900 spotted leaf 11, putative, expressed -
4 Sobic.001G085100 expressed protein -
5 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
6 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
7 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
8 Sobic.001G261436 - -
9 Sobic.009G228700 expressed protein -
10 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
11 Sobic.005G168600 NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
12 Sobic.003G261400 DUF292 domain containing protein, expressed -
13 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
14 Sobic.004G183600 molybdenum cofactor biosynthesis protein 1, putative, expressed K03639: moaA, GTP 3',8-cyclase
15 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
16 Sobic.004G275700 adaptor complexes medium subunit family domain containing protein, expressed K11826: AP-2 complex subunit mu-1
17 Sobic.002G352600 expressed protein -
18 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
19 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
20 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G047400 Sobic001G047400 Sobic002G116900 Sobic002G116900 Sobic001G047400--Sobic002G116900 Sobic009G165800 Sobic009G165800 Sobic001G047400--Sobic009G165800 Sobic010G000900 Sobic010G000900 Sobic001G047400--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic001G047400--Sobic001G085100 Sobic010G251000 Sobic010G251000 Sobic001G047400--Sobic010G251000 Sobic003G015900 Sobic003G015900 Sobic001G047400--Sobic003G015900 Sobic001G051200 Sobic001G051200 Sobic001G047400--Sobic001G051200 Sobic001G261436 Sobic001G261436 Sobic001G047400--Sobic001G261436 Sobic009G228700 Sobic009G228700 Sobic001G047400--Sobic009G228700 Sobic002G116900--Sobic001G047400 Sobic004G296400 Sobic004G296400 Sobic002G116900--Sobic004G296400 Sobic002G116900--Sobic010G251000 Sobic005G168600 Sobic005G168600 Sobic002G116900--Sobic005G168600 Sobic002G116900--Sobic009G165800 Sobic004G183600 Sobic004G183600 Sobic002G116900--Sobic004G183600 Sobic010G051300 Sobic010G051300 Sobic002G116900--Sobic010G051300 Sobic001G270400 Sobic001G270400 Sobic002G116900--Sobic001G270400 Sobic006G244700 Sobic006G244700 Sobic002G116900--Sobic006G244700 Sobic001G080700 Sobic001G080700 Sobic009G165800--Sobic001G080700 Sobic009G165800--Sobic001G047400 Sobic006G101700 Sobic006G101700 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic009G165800--Sobic003G015900 Sobic010G083700 Sobic010G083700 Sobic009G165800--Sobic010G083700 Sobic009G165800--Sobic010G251000 Sobic004G121100 Sobic004G121100 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic001G085100--Sobic006G101700 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G091300 Sobic001G091300 Sobic001G085100--Sobic001G091300 Sobic001G085100--Sobic003G012200 Sobic001G007000 Sobic001G007000 Sobic010G251000--Sobic001G007000 Sobic010G251000--Sobic001G080700 Sobic006G200600 Sobic006G200600 Sobic010G251000--Sobic006G200600 Sobic010G251000--Sobic004G066200 Sobic010G251000--Sobic004G121100 Sobic001G392300 Sobic001G392300 Sobic010G251000--Sobic001G392300 Sobic010G251000--Sobic001G047400 Sobic004G353200 Sobic004G353200 Sobic010G251000--Sobic004G353200 Sobic008G046500 Sobic008G046500 Sobic010G251000--Sobic008G046500 Sobic003G015900--Sobic001G051200 Sobic003G015900--Sobic010G083700 Sobic002G352600 Sobic002G352600 Sobic003G015900--Sobic002G352600 Sobic003G015900--Sobic001G047400 Sobic003G015900--Sobic009G165800 Sobic004G086600 Sobic004G086600 Sobic003G015900--Sobic004G086600 Sobic004G253000 Sobic004G253000 Sobic003G015900--Sobic004G253000 Sobic003G015900--Sobic010G000900 Sobic009G246950 Sobic009G246950 Sobic003G015900--Sobic009G246950 Sobic001G051200--Sobic003G015900 Sobic003G007500 Sobic003G007500 Sobic001G051200--Sobic003G007500 Sobic001G051200--Sobic003G261400 Sobic001G051200--Sobic001G047400 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic001G051200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic001G051200--Sobic010G168600 Sobic001G261436--Sobic001G085100 Sobic001G261436--Sobic001G047400 Sobic003G312200 Sobic003G312200 Sobic001G261436--Sobic003G312200 Sobic001G261436--Sobic001G091300 Sobic004G275700 Sobic004G275700 Sobic001G261436--Sobic004G275700 Sobic001G261436--Sobic009G228700 Sobic001G261436--Sobic001G007000 Sobic009G192000 Sobic009G192000 Sobic001G261436--Sobic009G192000 Sobic009G222500 Sobic009G222500 Sobic001G261436--Sobic009G222500 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic009G228700--Sobic001G323000 Sobic001G356600 Sobic001G356600 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic009G228700--Sobic006G148200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200
Octagon: transcription factors


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