Gene annotation
Transcriptome id Sobic.005G168600.1,Sobic.005G168600.2
Synonym Sb05g022890, GME
Functional annotation NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt A0A1B6PT02
Pfam PF16363
Panther DB PTHR10366 PTHR10366:SF327
NCBI CDD KOG1429; dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase
KEGG Orthology K10046; GDP-D-mannose 3', 5'-epimerase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G28840 : GDP-D-mannose 3\',5\'-epimerase
RAP-DB (Rice) LOC_Os11g37890.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a029506 , Zm00025a006917
Brachypodium KQJ88020 , KQJ96731 , KQJ96734 , KQJ88019 , KQJ88018 , KQJ96733 , KQJ96732 , KQJ96736 , KQJ96735
Barley HORVU3Hr1G059390.16 , HORVU5Hr1G079230.10 , HORVU5Hr1G079230.11 , HORVU3Hr1G059390.7 , HORVU3Hr1G059390.6 , HORVU3Hr1G059390.5 , HORVU3Hr1G059390.4 , HORVU3Hr1G059390.3 , HORVU3Hr1G059390.2 , HORVU3Hr1G059390.1 , HORVU3Hr1G059390.9 , HORVU3Hr1G059390.8 , HORVU5Hr1G079230.1 , HORVU5Hr1G079230.2 , HORVU5Hr1G079230.3 , HORVU5Hr1G079230.4 , HORVU5Hr1G079230.5 , HORVU5Hr1G079230.6 , HORVU5Hr1G079230.7 , HORVU5Hr1G079230.8 , HORVU5Hr1G079230.9 , HORVU3Hr1G059390.24 , HORVU3Hr1G059390.22 , HORVU3Hr1G059390.23 , HORVU3Hr1G059390.20 , HORVU3Hr1G059390.21 , HORVU3Hr1G059390.19 , HORVU3Hr1G059390.18 , HORVU3Hr1G059390.15 , HORVU3Hr1G059390.14 , HORVU3Hr1G059390.13 , HORVU3Hr1G059390.12 , HORVU3Hr1G059390.11 , HORVU3Hr1G059390.10 , HORVU0Hr1G013390.2 , HORVU0Hr1G013390.3 , HORVU0Hr1G013390.1
Wheat TraesCS5D02G309000 , TraesCS5A02G302400 , TraesCS1B02G431500 , TraesCS5B02G302500
Populus -


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cDNA sequences
Sobic.005G168600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
2 Sobic.002G116900 expressed protein -
3 Sobic.001G085100 expressed protein -
4 Sobic.006G280600 tubulin folding cofactor B, putative, expressed K17262: TBCB, CKAP1, tubulin-specific chaperone B
5 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
6 Sobic.004G296400 amino acid permease, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
7 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
8 Sobic.001G261436 - -
9 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
10 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
11 Sobic.010G051300 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
13 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
14 Sobic.007G188300 integral membrane family protein, putative, expressed -
15 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
16 Sobic.010G000900 spotted leaf 11, putative, expressed -
17 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
18 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
19 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
20 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic005G168600 Sobic005G168600 Sobic001G047400 Sobic001G047400 Sobic005G168600--Sobic001G047400 Sobic002G116900 Sobic002G116900 Sobic005G168600--Sobic002G116900 Sobic001G085100 Sobic001G085100 Sobic005G168600--Sobic001G085100 Sobic006G280600 Sobic006G280600 Sobic005G168600--Sobic006G280600 Sobic010G277100 Sobic010G277100 Sobic005G168600--Sobic010G277100 Sobic004G296400 Sobic004G296400 Sobic005G168600--Sobic004G296400 Sobic002G262900 Sobic002G262900 Sobic005G168600--Sobic002G262900 Sobic001G261436 Sobic001G261436 Sobic005G168600--Sobic001G261436 Sobic006G244700 Sobic006G244700 Sobic005G168600--Sobic006G244700 Sobic001G047400--Sobic002G116900 Sobic009G165800 Sobic009G165800 Sobic001G047400--Sobic009G165800 Sobic010G000900 Sobic010G000900 Sobic001G047400--Sobic010G000900 Sobic001G047400--Sobic001G085100 Sobic010G251000 Sobic010G251000 Sobic001G047400--Sobic010G251000 Sobic003G015900 Sobic003G015900 Sobic001G047400--Sobic003G015900 Sobic001G051200 Sobic001G051200 Sobic001G047400--Sobic001G051200 Sobic001G047400--Sobic001G261436 Sobic009G228700 Sobic009G228700 Sobic001G047400--Sobic009G228700 Sobic002G116900--Sobic001G047400 Sobic002G116900--Sobic004G296400 Sobic002G116900--Sobic010G251000 Sobic002G116900--Sobic005G168600 Sobic002G116900--Sobic009G165800 Sobic004G183600 Sobic004G183600 Sobic002G116900--Sobic004G183600 Sobic010G051300 Sobic010G051300 Sobic002G116900--Sobic010G051300 Sobic001G270400 Sobic001G270400 Sobic002G116900--Sobic001G270400 Sobic002G116900--Sobic006G244700 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G091300 Sobic001G091300 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic006G280600--Sobic005G168600 Sobic004G356900 Sobic004G356900 Sobic006G280600--Sobic004G356900 Sobic001G263000 Sobic001G263000 Sobic006G280600--Sobic001G263000 Sobic006G280600--Sobic001G085100 Sobic004G232800 Sobic004G232800 Sobic006G280600--Sobic004G232800 Sobic003G239800 Sobic003G239800 Sobic006G280600--Sobic003G239800 Sobic007G188300 Sobic007G188300 Sobic006G280600--Sobic007G188300 Sobic001G078800 Sobic001G078800 Sobic006G280600--Sobic001G078800 Sobic009G238850 Sobic009G238850 Sobic006G280600--Sobic009G238850 Sobic001G364600 Sobic001G364600 Sobic010G277100--Sobic001G364600 Sobic010G277100--Sobic005G168600 Sobic003G077900 Sobic003G077900 Sobic010G277100--Sobic003G077900 Sobic001G417900 Sobic001G417900 Sobic010G277100--Sobic001G417900 Sobic001G053000 Sobic001G053000 Sobic010G277100--Sobic001G053000 Sobic002G111200 Sobic002G111200 Sobic010G277100--Sobic002G111200 Sobic010G049100 Sobic010G049100 Sobic010G277100--Sobic010G049100 Sobic001G014800 Sobic001G014800 Sobic010G277100--Sobic001G014800 Sobic010G277100--Sobic007G188300 Sobic003G233600 Sobic003G233600 Sobic004G296400--Sobic003G233600 Sobic003G169600 Sobic003G169600 Sobic004G296400--Sobic003G169600 Sobic010G138000 Sobic010G138000 Sobic004G296400--Sobic010G138000 Sobic001G085300 Sobic001G085300 Sobic004G296400--Sobic001G085300 Sobic004G296400--Sobic002G116900 Sobic002G166300 Sobic002G166300 Sobic004G296400--Sobic002G166300 Sobic001G390800 Sobic001G390800 Sobic004G296400--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic004G296400--Sobic001G124200 Sobic004G040900 Sobic004G040900 Sobic004G296400--Sobic004G040900 Sobic002G008800 Sobic002G008800 Sobic002G262900--Sobic002G008800 Sobic004G275700 Sobic004G275700 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic004G039600 Sobic004G039600 Sobic002G262900--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic002G262900--Sobic010G205800 Sobic010G261600 Sobic010G261600 Sobic002G262900--Sobic010G261600 Sobic003G155900 Sobic003G155900 Sobic002G262900--Sobic003G155900 Sobic002G262900--Sobic001G124200 Sobic001G261436--Sobic001G085100 Sobic001G261436--Sobic001G047400 Sobic003G312200 Sobic003G312200 Sobic001G261436--Sobic003G312200 Sobic001G261436--Sobic001G091300 Sobic001G261436--Sobic004G275700 Sobic001G261436--Sobic009G228700 Sobic001G007000 Sobic001G007000 Sobic001G261436--Sobic001G007000 Sobic009G192000 Sobic009G192000 Sobic001G261436--Sobic009G192000 Sobic009G222500 Sobic009G222500 Sobic001G261436--Sobic009G222500 Sobic006G244700--Sobic001G263000 Sobic001G048200 Sobic001G048200 Sobic006G244700--Sobic001G048200 Sobic005G044800 Sobic005G044800 Sobic006G244700--Sobic005G044800 Sobic006G244700--Sobic007G188300 Sobic004G130900 Sobic004G130900 Sobic006G244700--Sobic004G130900 Sobic009G004600 Sobic009G004600 Sobic006G244700--Sobic009G004600 Sobic003G261400 Sobic003G261400 Sobic006G244700--Sobic003G261400 Sobic002G209400 Sobic002G209400 Sobic006G244700--Sobic002G209400 Sobic004G081800 Sobic004G081800 Sobic006G244700--Sobic004G081800
Octagon: transcription factors


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