Gene annotation
Transcriptome id Sobic.010G277100.1
Synonym Sb10g031075
Functional annotation regulator of ribonuclease, putative, expressed
UniProt A0A194YLW8
Pfam PF03737
Panther DB PTHR33254 PTHR33254:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G16450 : Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
RAP-DB (Rice) LOC_Os01g52460.2 : regulator of ribonuclease, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G277100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G364600 transmembrane protein 85, putative, expressed -
2 Sobic.005G168600 NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
3 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
4 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
5 Sobic.001G053000 small multi-drug export protein, putative, expressed -
6 Sobic.002G111200 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
7 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
9 Sobic.007G188300 integral membrane family protein, putative, expressed -
10 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
11 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
12 Sobic.002G116900 expressed protein -
13 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
14 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.001G339500 expressed protein -
16 Sobic.001G238700 TRM112, putative, expressed -
17 Sobic.006G160300 DNA binding protein, putative, expressed -
18 Sobic.006G201800 scramblase, putative, expressed -
19 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
20 Sobic.002G209400 transcription initiation factor TFIID subunit 10, putative, expressed K03134: transcription initiation factor TFIID subunit 10


Gene co-expression network
sample Sobic010G277100 Sobic010G277100 Sobic001G364600 Sobic001G364600 Sobic010G277100--Sobic001G364600 Sobic005G168600 Sobic005G168600 Sobic010G277100--Sobic005G168600 Sobic003G077900 Sobic003G077900 Sobic010G277100--Sobic003G077900 Sobic001G417900 Sobic001G417900 Sobic010G277100--Sobic001G417900 Sobic001G053000 Sobic001G053000 Sobic010G277100--Sobic001G053000 Sobic002G111200 Sobic002G111200 Sobic010G277100--Sobic002G111200 Sobic010G049100 Sobic010G049100 Sobic010G277100--Sobic010G049100 Sobic001G014800 Sobic001G014800 Sobic010G277100--Sobic001G014800 Sobic007G188300 Sobic007G188300 Sobic010G277100--Sobic007G188300 Sobic001G364600--Sobic010G277100 Sobic007G168600 Sobic007G168600 Sobic001G364600--Sobic007G168600 Sobic004G060600 Sobic004G060600 Sobic001G364600--Sobic004G060600 Sobic001G364600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic001G364600--Sobic002G400000 Sobic003G050600 Sobic003G050600 Sobic001G364600--Sobic003G050600 Sobic003G127300 Sobic003G127300 Sobic001G364600--Sobic003G127300 Sobic009G004600 Sobic009G004600 Sobic001G364600--Sobic009G004600 Sobic001G314500 Sobic001G314500 Sobic001G364600--Sobic001G314500 Sobic001G047400 Sobic001G047400 Sobic005G168600--Sobic001G047400 Sobic002G116900 Sobic002G116900 Sobic005G168600--Sobic002G116900 Sobic001G085100 Sobic001G085100 Sobic005G168600--Sobic001G085100 Sobic006G280600 Sobic006G280600 Sobic005G168600--Sobic006G280600 Sobic005G168600--Sobic010G277100 Sobic004G296400 Sobic004G296400 Sobic005G168600--Sobic004G296400 Sobic002G262900 Sobic002G262900 Sobic005G168600--Sobic002G262900 Sobic001G261436 Sobic001G261436 Sobic005G168600--Sobic001G261436 Sobic006G244700 Sobic006G244700 Sobic005G168600--Sobic006G244700 Sobic003G077900--Sobic002G400000 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic001G417900--Sobic003G077900 Sobic002G431600 Sobic002G431600 Sobic001G417900--Sobic002G431600 Sobic003G122500 Sobic003G122500 Sobic001G417900--Sobic003G122500 Sobic001G417900--Sobic010G277100 Sobic002G071000 Sobic002G071000 Sobic001G417900--Sobic002G071000 Sobic003G299000 Sobic003G299000 Sobic001G417900--Sobic003G299000 Sobic001G049500 Sobic001G049500 Sobic001G417900--Sobic001G049500 Sobic001G427500 Sobic001G427500 Sobic001G417900--Sobic001G427500 Sobic001G414500 Sobic001G414500 Sobic001G417900--Sobic001G414500 Sobic001G043800 Sobic001G043800 Sobic001G053000--Sobic001G043800 Sobic001G053000--Sobic010G277100 Sobic002G343400 Sobic002G343400 Sobic001G053000--Sobic002G343400 Sobic003G314500 Sobic003G314500 Sobic001G053000--Sobic003G314500 Sobic007G062500 Sobic007G062500 Sobic001G053000--Sobic007G062500 Sobic008G144800 Sobic008G144800 Sobic001G053000--Sobic008G144800 Sobic002G281800 Sobic002G281800 Sobic001G053000--Sobic002G281800 Sobic001G053000--Sobic001G417900 Sobic010G140600 Sobic010G140600 Sobic001G053000--Sobic010G140600 Sobic001G339500 Sobic001G339500 Sobic002G111200--Sobic001G339500 Sobic002G111200--Sobic001G014800 Sobic001G219300 Sobic001G219300 Sobic002G111200--Sobic001G219300 Sobic002G339600 Sobic002G339600 Sobic002G111200--Sobic002G339600 Sobic002G111200--Sobic010G277100 Sobic008G118900 Sobic008G118900 Sobic002G111200--Sobic008G118900 Sobic002G309900 Sobic002G309900 Sobic002G111200--Sobic002G309900 Sobic002G209400 Sobic002G209400 Sobic002G111200--Sobic002G209400 Sobic002G111200--Sobic009G004600 Sobic004G080100 Sobic004G080100 Sobic010G049100--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic010G049100--Sobic003G246700 Sobic010G049100--Sobic001G014800 Sobic008G032600 Sobic008G032600 Sobic010G049100--Sobic008G032600 Sobic004G121300 Sobic004G121300 Sobic010G049100--Sobic004G121300 Sobic002G226900 Sobic002G226900 Sobic010G049100--Sobic002G226900 Sobic010G049100--Sobic004G296400 Sobic009G139900 Sobic009G139900 Sobic010G049100--Sobic009G139900 Sobic004G136300 Sobic004G136300 Sobic010G049100--Sobic004G136300 Sobic010G020400 Sobic010G020400 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G333100 Sobic001G333100 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic009G149500 Sobic009G149500 Sobic007G188300--Sobic009G149500 Sobic007G188300--Sobic001G085100 Sobic010G205300 Sobic010G205300 Sobic007G188300--Sobic010G205300 Sobic007G188300--Sobic006G244700 Sobic001G263000 Sobic001G263000 Sobic007G188300--Sobic001G263000 Sobic007G188300--Sobic001G014800 Sobic007G014900 Sobic007G014900 Sobic007G188300--Sobic007G014900 Sobic004G356900 Sobic004G356900 Sobic007G188300--Sobic004G356900 Sobic007G188300--Sobic002G209400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.