Gene annotation
Transcriptome id Sobic.001G414500.2,Sobic.001G414500.1
Synonym ITN1, Sb01g039040
Functional annotation ankyrin repeat-containing protein, putative, expressed
UniProt C5WPA2 , A0A1Z5SA68
Pfam PF13962 PF12796
Panther DB PTHR24177 PTHR24177:SF41
NCBI CDD KOG0502; Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) KOG441226S proteasome regulatory complex, subunit PSMD10 KOG0508Ankyrin repeat protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12360 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os03g17240.1 : ankyrin repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052722 , Zm00025a001895
Brachypodium KQK22277
Barley HORVU4Hr1G058480.10 , HORVU4Hr1G058480.9 , HORVU4Hr1G058480.8 , HORVU4Hr1G058480.2 , HORVU4Hr1G058480.1 , HORVU4Hr1G058480.7 , HORVU4Hr1G058480.6 , HORVU4Hr1G058480.5 , HORVU4Hr1G058480.4 , HORVU4Hr1G058480.3
Wheat TraesCS4A02G102200 , TraesCS4A02G102200 , TraesCS4A02G102200 , TraesCS4B02G202400 , TraesCS4B02G202400 , TraesCS4D02G203300
Populus -


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cDNA sequences
Sobic.001G414500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
2 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
3 Sobic.006G261300 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
4 Sobic.006G092400 calmodulin binding protein, putative, expressed -
5 Sobic.002G217400 HD domain containing protein, putative, expressed -
6 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
7 Sobic.002G290400 Protein kinase superfamily protein(PubMedID : 26465154)@serine/threonine-protein kinase SRPK1, putative, expressed -
8 Sobic.006G090000 DUF1771 domain containing protein, putative, expressed -
9 Sobic.001G503300 tyrosine protein kinase domain containing protein, putative, expressed -
10 Sobic.003G076500 MYB family transcription factor, putative, expressed -
11 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
12 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
13 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
14 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
15 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
16 Sobic.002G431600 protein kinase APK1B, chloroplast precursor, putative, expressed -
17 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
18 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
19 Sobic.007G179800 TBC domain containing protein, expressed -
20 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1


Gene co-expression network
sample Sobic001G414500 Sobic001G414500 Sobic008G089900 Sobic008G089900 Sobic001G414500--Sobic008G089900 Sobic009G219900 Sobic009G219900 Sobic001G414500--Sobic009G219900 Sobic006G261300 Sobic006G261300 Sobic001G414500--Sobic006G261300 Sobic006G092400 Sobic006G092400 Sobic001G414500--Sobic006G092400 Sobic002G217400 Sobic002G217400 Sobic001G414500--Sobic002G217400 Sobic003G077900 Sobic003G077900 Sobic001G414500--Sobic003G077900 Sobic002G290400 Sobic002G290400 Sobic001G414500--Sobic002G290400 Sobic006G090000 Sobic006G090000 Sobic001G414500--Sobic006G090000 Sobic001G503300 Sobic001G503300 Sobic001G414500--Sobic001G503300 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic009G162600 Sobic009G162600 Sobic008G089900--Sobic009G162600 Sobic004G103000 Sobic004G103000 Sobic008G089900--Sobic004G103000 Sobic002G204200 Sobic002G204200 Sobic008G089900--Sobic002G204200 Sobic002G001000 Sobic002G001000 Sobic008G089900--Sobic002G001000 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic009G187400 Sobic009G187400 Sobic008G089900--Sobic009G187400 Sobic009G207300 Sobic009G207300 Sobic008G089900--Sobic009G207300 Sobic010G188100 Sobic010G188100 Sobic009G219900--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic009G219900--Sobic001G220400 Sobic009G219900--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic010G101500 Sobic010G101500 Sobic009G219900--Sobic010G101500 Sobic009G219900--Sobic001G414500 Sobic002G431600 Sobic002G431600 Sobic009G219900--Sobic002G431600 Sobic006G261300--Sobic001G414500 Sobic006G261300--Sobic009G219900 Sobic006G261300--Sobic001G220400 Sobic006G261300--Sobic008G089900 Sobic001G143000 Sobic001G143000 Sobic006G261300--Sobic001G143000 Sobic006G261300--Sobic006G083800 Sobic003G416400 Sobic003G416400 Sobic006G261300--Sobic003G416400 Sobic001G511900 Sobic001G511900 Sobic006G261300--Sobic001G511900 Sobic006G261300--Sobic009G187400 Sobic007G179800 Sobic007G179800 Sobic006G092400--Sobic007G179800 Sobic002G130800 Sobic002G130800 Sobic006G092400--Sobic002G130800 Sobic006G209400 Sobic006G209400 Sobic006G092400--Sobic006G209400 Sobic010G074300 Sobic010G074300 Sobic006G092400--Sobic010G074300 Sobic004G235000 Sobic004G235000 Sobic006G092400--Sobic004G235000 Sobic001G508100 Sobic001G508100 Sobic006G092400--Sobic001G508100 Sobic003G220800 Sobic003G220800 Sobic006G092400--Sobic003G220800 Sobic006G092400--Sobic006G090000 Sobic010G147100 Sobic010G147100 Sobic006G092400--Sobic010G147100 Sobic002G217400--Sobic001G414500 Sobic004G102400 Sobic004G102400 Sobic002G217400--Sobic004G102400 Sobic003G352600 Sobic003G352600 Sobic002G217400--Sobic003G352600 Sobic005G203800 Sobic005G203800 Sobic002G217400--Sobic005G203800 Sobic001G350900 Sobic001G350900 Sobic002G217400--Sobic001G350900 Sobic003G098000 Sobic003G098000 Sobic002G217400--Sobic003G098000 Sobic009G138100 Sobic009G138100 Sobic002G217400--Sobic009G138100 Sobic002G375300 Sobic002G375300 Sobic002G217400--Sobic002G375300 Sobic010G130200 Sobic010G130200 Sobic002G217400--Sobic010G130200 Sobic002G400000 Sobic002G400000 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic002G290400--Sobic006G209400 Sobic003G076500 Sobic003G076500 Sobic002G290400--Sobic003G076500 Sobic010G251300 Sobic010G251300 Sobic002G290400--Sobic010G251300 Sobic003G309200 Sobic003G309200 Sobic002G290400--Sobic003G309200 Sobic002G290400--Sobic001G414500 Sobic002G290400--Sobic008G089900 Sobic002G290400--Sobic006G092400 Sobic004G118200 Sobic004G118200 Sobic002G290400--Sobic004G118200 Sobic010G230500 Sobic010G230500 Sobic002G290400--Sobic010G230500 Sobic002G166900 Sobic002G166900 Sobic006G090000--Sobic002G166900 Sobic006G090000--Sobic006G092400 Sobic010G000900 Sobic010G000900 Sobic006G090000--Sobic010G000900 Sobic004G067100 Sobic004G067100 Sobic006G090000--Sobic004G067100 Sobic006G090000--Sobic001G414500 Sobic006G090000--Sobic003G077900 Sobic006G090000--Sobic007G179800 Sobic004G321900 Sobic004G321900 Sobic006G090000--Sobic004G321900 Sobic001G283200 Sobic001G283200 Sobic006G090000--Sobic001G283200 Sobic010G174500 Sobic010G174500 Sobic001G503300--Sobic010G174500 Sobic004G234900 Sobic004G234900 Sobic001G503300--Sobic004G234900 Sobic001G098200 Sobic001G098200 Sobic001G503300--Sobic001G098200 Sobic001G503300--Sobic006G209400 Sobic003G413500 Sobic003G413500 Sobic001G503300--Sobic003G413500 Sobic001G516100 Sobic001G516100 Sobic001G503300--Sobic001G516100 Sobic001G503300--Sobic001G414500 Sobic001G503300--Sobic006G092400 Sobic003G044200 Sobic003G044200 Sobic001G503300--Sobic003G044200
Octagon: transcription factors


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