Gene annotation
Transcriptome id Sobic.002G217400.1
Synonym RSH2, AT-RSH2, Sb02g025940, ATRSH2
Functional annotation HD domain containing protein, putative, expressed
UniProt C5XDR5
Pfam PF01966 PF04607
Panther DB PTHR21262 PTHR21262:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015969; guanosine tetraphosphate metabolic process


Orthologs (automatic annotation)
TAIR AT3G14050 : RELA/SPOT homolog 2
RAP-DB (Rice) LOC_Os09g27050.1 : HD domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a047172 , Zm00025a014014
Brachypodium KQJ98554 , KQJ90431
Barley HORVU5Hr1G061710.2 , HORVU5Hr1G061710.3 , HORVU5Hr1G061710.1
Wheat TraesCS5B02G207900 , TraesCS5A02G209800 , TraesCS5D02G216100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
2 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
3 Sobic.003G352600 ZOS1-16 - C2H2 zinc finger protein, expressed -
4 Sobic.005G203800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lipase precursor, putative, expressed -
5 Sobic.001G350900 OsFBO14 - F-box and other domain containing protein, expressed -
6 Sobic.003G098000 armadillo/beta-catenin repeat family protein, putative, expressed K08332: vacuolar protein 8
7 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
8 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
9 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
10 Sobic.006G233500 transcription factor, putative, expressed K14431: transcription factor TGA
11 Sobic.007G068900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
12 Sobic.001G222200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@endo-beta-N-acetylglucosaminidase, putative, expressed -
13 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
14 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
15 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G337200 dehydrogenase, putative, expressed -
17 Sobic.010G080100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
18 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
20 Sobic.007G004500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase


Gene co-expression network
sample Sobic002G217400 Sobic002G217400 Sobic001G414500 Sobic001G414500 Sobic002G217400--Sobic001G414500 Sobic004G102400 Sobic004G102400 Sobic002G217400--Sobic004G102400 Sobic003G352600 Sobic003G352600 Sobic002G217400--Sobic003G352600 Sobic005G203800 Sobic005G203800 Sobic002G217400--Sobic005G203800 Sobic001G350900 Sobic001G350900 Sobic002G217400--Sobic001G350900 Sobic003G098000 Sobic003G098000 Sobic002G217400--Sobic003G098000 Sobic009G138100 Sobic009G138100 Sobic002G217400--Sobic009G138100 Sobic002G375300 Sobic002G375300 Sobic002G217400--Sobic002G375300 Sobic010G130200 Sobic010G130200 Sobic002G217400--Sobic010G130200 Sobic008G089900 Sobic008G089900 Sobic001G414500--Sobic008G089900 Sobic009G219900 Sobic009G219900 Sobic001G414500--Sobic009G219900 Sobic006G261300 Sobic006G261300 Sobic001G414500--Sobic006G261300 Sobic006G092400 Sobic006G092400 Sobic001G414500--Sobic006G092400 Sobic001G414500--Sobic002G217400 Sobic003G077900 Sobic003G077900 Sobic001G414500--Sobic003G077900 Sobic002G290400 Sobic002G290400 Sobic001G414500--Sobic002G290400 Sobic006G090000 Sobic006G090000 Sobic001G414500--Sobic006G090000 Sobic001G503300 Sobic001G503300 Sobic001G414500--Sobic001G503300 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic009G167700 Sobic009G167700 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic004G102400--Sobic001G089800 Sobic001G057800 Sobic001G057800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic001G390800 Sobic001G390800 Sobic003G352600--Sobic001G390800 Sobic001G137100 Sobic001G137100 Sobic003G352600--Sobic001G137100 Sobic002G424000 Sobic002G424000 Sobic003G352600--Sobic002G424000 Sobic009G126900 Sobic009G126900 Sobic003G352600--Sobic009G126900 Sobic001G107600 Sobic001G107600 Sobic003G352600--Sobic001G107600 Sobic001G440600 Sobic001G440600 Sobic003G352600--Sobic001G440600 Sobic003G352600--Sobic009G138100 Sobic004G233200 Sobic004G233200 Sobic003G352600--Sobic004G233200 Sobic002G270500 Sobic002G270500 Sobic003G352600--Sobic002G270500 Sobic005G203800--Sobic010G130200 Sobic009G133600 Sobic009G133600 Sobic005G203800--Sobic009G133600 Sobic003G436300 Sobic003G436300 Sobic005G203800--Sobic003G436300 Sobic007G007000 Sobic007G007000 Sobic005G203800--Sobic007G007000 Sobic006G034000 Sobic006G034000 Sobic005G203800--Sobic006G034000 Sobic001G121200 Sobic001G121200 Sobic005G203800--Sobic001G121200 Sobic003G354400 Sobic003G354400 Sobic005G203800--Sobic003G354400 Sobic010G205800 Sobic010G205800 Sobic005G203800--Sobic010G205800 Sobic005G203800--Sobic001G390800 Sobic004G211900 Sobic004G211900 Sobic001G350900--Sobic004G211900 Sobic001G217400 Sobic001G217400 Sobic001G350900--Sobic001G217400 Sobic004G211866 Sobic004G211866 Sobic001G350900--Sobic004G211866 Sobic006G033200 Sobic006G033200 Sobic001G350900--Sobic006G033200 Sobic008G047400 Sobic008G047400 Sobic001G350900--Sobic008G047400 Sobic001G350900--Sobic002G217400 Sobic001G103200 Sobic001G103200 Sobic001G350900--Sobic001G103200 Sobic001G541100 Sobic001G541100 Sobic001G350900--Sobic001G541100 Sobic001G350900--Sobic001G414500 Sobic003G098000--Sobic002G375300 Sobic003G098000--Sobic004G102400 Sobic003G228100 Sobic003G228100 Sobic003G098000--Sobic003G228100 Sobic003G098000--Sobic004G042300 Sobic003G246700 Sobic003G246700 Sobic003G098000--Sobic003G246700 Sobic004G337200 Sobic004G337200 Sobic003G098000--Sobic004G337200 Sobic003G098000--Sobic002G217400 Sobic003G098000--Sobic005G203800 Sobic003G098000--Sobic001G057800 Sobic010G278200 Sobic010G278200 Sobic009G138100--Sobic010G278200 Sobic010G130000 Sobic010G130000 Sobic009G138100--Sobic010G130000 Sobic003G248200 Sobic003G248200 Sobic009G138100--Sobic003G248200 Sobic001G124200 Sobic001G124200 Sobic009G138100--Sobic001G124200 Sobic009G138100--Sobic006G033200 Sobic009G228700 Sobic009G228700 Sobic009G138100--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G138100--Sobic004G066200 Sobic009G219000 Sobic009G219000 Sobic009G138100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic009G138100--Sobic001G323000 Sobic002G375300--Sobic001G158500 Sobic001G395400 Sobic001G395400 Sobic002G375300--Sobic001G395400 Sobic010G000900 Sobic010G000900 Sobic002G375300--Sobic010G000900 Sobic003G416400 Sobic003G416400 Sobic002G375300--Sobic003G416400 Sobic007G068900 Sobic007G068900 Sobic002G375300--Sobic007G068900 Sobic002G375300--Sobic003G098000 Sobic002G375300--Sobic006G092400 Sobic002G352600 Sobic002G352600 Sobic002G375300--Sobic002G352600 Sobic002G375300--Sobic004G102400 Sobic006G083600 Sobic006G083600 Sobic010G130200--Sobic006G083600 Sobic001G111150 Sobic001G111150 Sobic010G130200--Sobic001G111150 Sobic003G305200 Sobic003G305200 Sobic010G130200--Sobic003G305200 Sobic010G130200--Sobic006G271200 Sobic010G130200--Sobic002G270500 Sobic010G264200 Sobic010G264200 Sobic010G130200--Sobic010G264200 Sobic010G130200--Sobic003G354400 Sobic007G024700 Sobic007G024700 Sobic010G130200--Sobic007G024700 Sobic010G130200--Sobic005G203800
Octagon: transcription factors


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