Gene annotation
Transcriptome id Sobic.003G352600.1
Synonym Sb03g039510
Functional annotation ZOS1-16 - C2H2 zinc finger protein, expressed
UniProt C5XPP9
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37650 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os01g62460.1 : ZOS1-16 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a026898
Brachypodium PNT73169 , PNT73168 , PNT73166 , PNT73167
Barley HORVU3Hr1G086210.6 , HORVU3Hr1G086210.7 , HORVU3Hr1G086210.4 , HORVU3Hr1G086210.5 , HORVU3Hr1G086210.2 , HORVU3Hr1G086210.3 , HORVU3Hr1G086210.1 , HORVU3Hr1G086210.8 , HORVU3Hr1G086210.9
Wheat TraesCS3A02G360300
Populus PNT56355 , PNT56356


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
2 Sobic.001G137100 homeodomain protein, putative, expressed -
3 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
4 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
5 Sobic.001G107600 - K18328: lariat debranching enzyme
6 Sobic.001G440600 expressed protein -
7 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
8 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
9 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
10 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
11 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
14 Sobic.003G372500 DUF803 domain containing, putative, expressed -
15 Sobic.002G427050 - -
16 Sobic.002G217400 HD domain containing protein, putative, expressed -
17 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
18 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
19 Sobic.003G139800 protein kinase, putative, expressed K13436: pto-interacting protein 1
20 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase


Gene co-expression network
sample Sobic003G352600 Sobic003G352600 Sobic001G390800 Sobic001G390800 Sobic003G352600--Sobic001G390800 Sobic001G137100 Sobic001G137100 Sobic003G352600--Sobic001G137100 Sobic002G424000 Sobic002G424000 Sobic003G352600--Sobic002G424000 Sobic009G126900 Sobic009G126900 Sobic003G352600--Sobic009G126900 Sobic001G107600 Sobic001G107600 Sobic003G352600--Sobic001G107600 Sobic001G440600 Sobic001G440600 Sobic003G352600--Sobic001G440600 Sobic009G138100 Sobic009G138100 Sobic003G352600--Sobic009G138100 Sobic004G233200 Sobic004G233200 Sobic003G352600--Sobic004G233200 Sobic002G270500 Sobic002G270500 Sobic003G352600--Sobic002G270500 Sobic001G268200 Sobic001G268200 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic010G147100 Sobic010G147100 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic001G137100--Sobic001G390800 Sobic007G024700 Sobic007G024700 Sobic001G137100--Sobic007G024700 Sobic010G228400 Sobic010G228400 Sobic001G137100--Sobic010G228400 Sobic002G132000 Sobic002G132000 Sobic001G137100--Sobic002G132000 Sobic001G270400 Sobic001G270400 Sobic001G137100--Sobic001G270400 Sobic002G130800 Sobic002G130800 Sobic001G137100--Sobic002G130800 Sobic009G094300 Sobic009G094300 Sobic001G137100--Sobic009G094300 Sobic002G111000 Sobic002G111000 Sobic001G137100--Sobic002G111000 Sobic002G427050 Sobic002G427050 Sobic001G137100--Sobic002G427050 Sobic004G006200 Sobic004G006200 Sobic002G424000--Sobic004G006200 Sobic003G433100 Sobic003G433100 Sobic002G424000--Sobic003G433100 Sobic002G424000--Sobic007G024700 Sobic009G207000 Sobic009G207000 Sobic002G424000--Sobic009G207000 Sobic002G424000--Sobic003G352600 Sobic002G424000--Sobic001G137100 Sobic002G424000--Sobic002G130800 Sobic002G424000--Sobic002G132000 Sobic002G424000--Sobic001G390800 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic001G107600--Sobic001G050200 Sobic001G107600--Sobic010G228400 Sobic001G107600--Sobic001G390800 Sobic003G365300 Sobic003G365300 Sobic001G107600--Sobic003G365300 Sobic006G115600 Sobic006G115600 Sobic001G107600--Sobic006G115600 Sobic004G264400 Sobic004G264400 Sobic001G107600--Sobic004G264400 Sobic001G107600--Sobic002G427050 Sobic003G372500 Sobic003G372500 Sobic001G107600--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic001G107600--Sobic010G227100 Sobic001G440600--Sobic003G005600 Sobic001G440600--Sobic001G003000 Sobic001G440600--Sobic001G107600 Sobic001G440600--Sobic003G352600 Sobic003G036800 Sobic003G036800 Sobic001G440600--Sobic003G036800 Sobic001G440600--Sobic002G427050 Sobic001G474700 Sobic001G474700 Sobic001G440600--Sobic001G474700 Sobic007G060201 Sobic007G060201 Sobic001G440600--Sobic007G060201 Sobic001G350700 Sobic001G350700 Sobic001G440600--Sobic001G350700 Sobic010G278200 Sobic010G278200 Sobic009G138100--Sobic010G278200 Sobic010G130000 Sobic010G130000 Sobic009G138100--Sobic010G130000 Sobic003G248200 Sobic003G248200 Sobic009G138100--Sobic003G248200 Sobic001G124200 Sobic001G124200 Sobic009G138100--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic009G138100--Sobic006G033200 Sobic009G228700 Sobic009G228700 Sobic009G138100--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G138100--Sobic004G066200 Sobic009G219000 Sobic009G219000 Sobic009G138100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic009G138100--Sobic001G323000 Sobic001G488700 Sobic001G488700 Sobic004G233200--Sobic001G488700 Sobic004G233200--Sobic010G147100 Sobic004G233200--Sobic002G130800 Sobic008G059100 Sobic008G059100 Sobic004G233200--Sobic008G059100 Sobic004G233200--Sobic001G390800 Sobic002G187700 Sobic002G187700 Sobic004G233200--Sobic002G187700 Sobic002G305000 Sobic002G305000 Sobic004G233200--Sobic002G305000 Sobic004G233200--Sobic001G268200 Sobic004G306500 Sobic004G306500 Sobic004G233200--Sobic004G306500 Sobic002G270500--Sobic007G024700 Sobic001G207400 Sobic001G207400 Sobic002G270500--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic002G270500--Sobic004G355000 Sobic005G157000 Sobic005G157000 Sobic002G270500--Sobic005G157000 Sobic002G430000 Sobic002G430000 Sobic002G270500--Sobic002G430000 Sobic002G270500--Sobic009G126900 Sobic002G270500--Sobic009G094300 Sobic004G113400 Sobic004G113400 Sobic002G270500--Sobic004G113400 Sobic004G269200 Sobic004G269200 Sobic002G270500--Sobic004G269200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.