Gene annotation
Transcriptome id Sobic.004G233200.1
Synonym Sb04g027660, SbERF49, RAP2.4, ethylene response factor 49
Functional annotation Not investigated (PubMedID : 23766026)
ethylene-responsive transcription factor, putative, expressed
UniProt C5XYP1
Pfam PF00847
Panther DB PTHR31657 PTHR31657:SF6
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G39780 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g51670.1 : ethylene-responsive transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a053203 , Zm00025a046712 , Zm00025a035951 , Zm00025a055020 , Zm00025a022855 , Zm00025a033320 , Zm00025a057002 , Zm00025a001066 , Zm00025a045437 , Zm00025a021006 , Zm00025a022123 , Zm00025a031821 , Zm00025a033171 , Zm00025a009843 , Zm00025a000671 , Zm00025a049497
Brachypodium KQJ90021 , PNT61818 , KQK00491 , KQK01869 , PNT62439 , KQK18916 , KQJ98221 , KQJ86112
Barley HORVU6Hr1G060220.6 , HORVU6Hr1G060220.7 , HORVU6Hr1G060220.4 , HORVU6Hr1G060220.5 , HORVU6Hr1G060220.3 , HORVU6Hr1G060220.2 , HORVU6Hr1G060220.1 , HORVU5Hr1G018720.1 , HORVU7Hr1G037180.2 , HORVU3Hr1G030310.1 , HORVU7Hr1G037180.3 , HORVU7Hr1G037180.1 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU6Hr1G074970.4 , HORVU5Hr1G058270.1 , HORVU5Hr1G058270.3 , HORVU5Hr1G058270.2 , HORVU5Hr1G058270.5 , HORVU5Hr1G058270.4 , HORVU5Hr1G058270.6 , HORVU4Hr1G000960.1 , HORVU6Hr1G060140.3 , HORVU6Hr1G060140.1
Wheat TraesCS5D02G200900 , TraesCS5B02G193200 , TraesCS2A02G373700
Populus -


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cDNA sequences
Sobic.004G233200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
2 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
3 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
4 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
5 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
6 Sobic.002G187700 expressed protein -
7 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
8 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
10 Sobic.010G196500 zinc-binding protein, putative, expressed -
11 Sobic.003G086900 C2 domain containing protein, putative, expressed -
12 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.001G481900 SAC domain containing protein, putative, expressed -
15 Sobic.003G372500 DUF803 domain containing, putative, expressed -
16 Sobic.001G298700 - -
17 Sobic.003G352600 ZOS1-16 - C2H2 zinc finger protein, expressed -
18 Sobic.007G020600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux protein, putative, expressed -
19 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
20 Sobic.003G302900 transcriptional regulator family protein, putative, expressed -


Gene co-expression network
sample Sobic004G233200 Sobic004G233200 Sobic001G488700 Sobic001G488700 Sobic004G233200--Sobic001G488700 Sobic010G147100 Sobic010G147100 Sobic004G233200--Sobic010G147100 Sobic002G130800 Sobic002G130800 Sobic004G233200--Sobic002G130800 Sobic008G059100 Sobic008G059100 Sobic004G233200--Sobic008G059100 Sobic001G390800 Sobic001G390800 Sobic004G233200--Sobic001G390800 Sobic002G187700 Sobic002G187700 Sobic004G233200--Sobic002G187700 Sobic002G305000 Sobic002G305000 Sobic004G233200--Sobic002G305000 Sobic001G268200 Sobic001G268200 Sobic004G233200--Sobic001G268200 Sobic004G306500 Sobic004G306500 Sobic004G233200--Sobic004G306500 Sobic001G488700--Sobic008G059100 Sobic001G500800 Sobic001G500800 Sobic001G488700--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic001G488700--Sobic004G233200 Sobic006G175800 Sobic006G175800 Sobic001G488700--Sobic006G175800 Sobic003G302800 Sobic003G302800 Sobic001G488700--Sobic003G302800 Sobic001G481900 Sobic001G481900 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic009G053900 Sobic009G053900 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic006G092400 Sobic006G092400 Sobic002G130800--Sobic006G092400 Sobic001G137100 Sobic001G137100 Sobic002G130800--Sobic001G137100 Sobic004G118200 Sobic004G118200 Sobic002G130800--Sobic004G118200 Sobic002G130800--Sobic010G147100 Sobic006G090500 Sobic006G090500 Sobic002G130800--Sobic006G090500 Sobic010G228400 Sobic010G228400 Sobic002G130800--Sobic010G228400 Sobic002G130800--Sobic004G233200 Sobic009G217100 Sobic009G217100 Sobic002G130800--Sobic009G217100 Sobic002G130800--Sobic001G481900 Sobic008G059100--Sobic001G488700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic008G059100--Sobic001G481900 Sobic008G059100--Sobic004G233200 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic007G164000 Sobic007G164000 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic002G187700--Sobic001G481900 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic004G169000 Sobic004G169000 Sobic002G187700--Sobic004G169000 Sobic002G359400 Sobic002G359400 Sobic002G305000--Sobic002G359400 Sobic009G201300 Sobic009G201300 Sobic002G305000--Sobic009G201300 Sobic003G354600 Sobic003G354600 Sobic002G305000--Sobic003G354600 Sobic002G305000--Sobic010G147100 Sobic001G355800 Sobic001G355800 Sobic002G305000--Sobic001G355800 Sobic002G305000--Sobic006G175800 Sobic001G303100 Sobic001G303100 Sobic002G305000--Sobic001G303100 Sobic002G305000--Sobic010G074300 Sobic003G220800 Sobic003G220800 Sobic002G305000--Sobic003G220800 Sobic001G268200--Sobic001G390800 Sobic010G013200 Sobic010G013200 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic001G268200--Sobic003G313500 Sobic001G268200--Sobic001G121200 Sobic001G268200--Sobic010G139600 Sobic001G268200--Sobic001G085300 Sobic001G194200 Sobic001G194200 Sobic001G268200--Sobic001G194200 Sobic001G268200--Sobic009G053900 Sobic004G306500--Sobic001G481900 Sobic004G306500--Sobic002G187700 Sobic007G020600 Sobic007G020600 Sobic004G306500--Sobic007G020600 Sobic003G086900 Sobic003G086900 Sobic004G306500--Sobic003G086900 Sobic004G306500--Sobic010G196500 Sobic009G161550 Sobic009G161550 Sobic004G306500--Sobic009G161550 Sobic001G128300 Sobic001G128300 Sobic004G306500--Sobic001G128300 Sobic004G091100 Sobic004G091100 Sobic004G306500--Sobic004G091100 Sobic004G306500--Sobic004G169000
Octagon: transcription factors


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