Gene annotation
Transcriptome id Sobic.007G020600.1,Sobic.007G020600.2
Synonym Sb07g001800
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
MATE efflux protein, putative, expressed
UniProt C5YME9 , A0A1Z5R8M9
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF128
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G51340 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g13940.1 : MATE efflux protein, putative, expressed
MaizeGDB (Corn) Zm00025a040302 , Zm00025a039357 , Zm00025a008319 , Zm00025a005741
Brachypodium KQJ96450
Barley HORVU1Hr1G068960.20 , HORVU1Hr1G068960.23 , HORVU1Hr1G068960.22 , HORVU1Hr1G068960.25 , HORVU1Hr1G068960.24 , HORVU1Hr1G068960.27 , HORVU1Hr1G068960.26 , HORVU1Hr1G068960.28 , HORVU1Hr1G068960.21 , HORVU1Hr1G068960.10 , HORVU1Hr1G068960.6 , HORVU1Hr1G068960.7 , HORVU1Hr1G068960.4 , HORVU1Hr1G068960.5 , HORVU1Hr1G068960.2 , HORVU1Hr1G068960.3 , HORVU1Hr1G068960.1 , HORVU1Hr1G068960.13 , HORVU1Hr1G068960.8 , HORVU1Hr1G068960.9 , HORVU1Hr1G068960.18 , HORVU1Hr1G068960.19 , HORVU1Hr1G068960.15 , HORVU1Hr1G068960.16 , HORVU1Hr1G068960.17 , HORVU1Hr1G068960.11 , HORVU1Hr1G068960.12
Wheat TraesCS1B02G315900 , TraesCS1B02G315900 , TraesCS1D02G304800 , TraesCS1D02G304800 , TraesCS1A02G305200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
2 Sobic.003G372500 DUF803 domain containing, putative, expressed -
3 Sobic.001G481900 SAC domain containing protein, putative, expressed -
4 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
5 Sobic.002G187700 expressed protein -
6 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.009G191000 MATH domain containing protein, expressed -
8 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
9 Sobic.010G141800 expressed protein -
10 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
11 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
12 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.010G013800 START domain containing protein, expressed -
14 Sobic.003G275700 myosin head family protein, expressed K10357: myosin V
15 Sobic.006G142775 - K11592: DICER1, endoribonuclease Dicer
16 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
17 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
18 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
19 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
20 Sobic.004G341900 lecithine cholesterol acyltransferase, putative, expressed -


Gene co-expression network
sample Sobic007G020600 Sobic007G020600 Sobic004G306500 Sobic004G306500 Sobic007G020600--Sobic004G306500 Sobic003G372500 Sobic003G372500 Sobic007G020600--Sobic003G372500 Sobic001G481900 Sobic001G481900 Sobic007G020600--Sobic001G481900 Sobic001G128300 Sobic001G128300 Sobic007G020600--Sobic001G128300 Sobic002G187700 Sobic002G187700 Sobic007G020600--Sobic002G187700 Sobic003G029700 Sobic003G029700 Sobic007G020600--Sobic003G029700 Sobic009G191000 Sobic009G191000 Sobic007G020600--Sobic009G191000 Sobic003G198800 Sobic003G198800 Sobic007G020600--Sobic003G198800 Sobic010G141800 Sobic010G141800 Sobic007G020600--Sobic010G141800 Sobic004G306500--Sobic001G481900 Sobic004G306500--Sobic002G187700 Sobic004G306500--Sobic007G020600 Sobic003G086900 Sobic003G086900 Sobic004G306500--Sobic003G086900 Sobic010G196500 Sobic010G196500 Sobic004G306500--Sobic010G196500 Sobic009G161550 Sobic009G161550 Sobic004G306500--Sobic009G161550 Sobic004G306500--Sobic001G128300 Sobic004G091100 Sobic004G091100 Sobic004G306500--Sobic004G091100 Sobic004G169000 Sobic004G169000 Sobic004G306500--Sobic004G169000 Sobic007G075400 Sobic007G075400 Sobic003G372500--Sobic007G075400 Sobic010G147100 Sobic010G147100 Sobic003G372500--Sobic010G147100 Sobic003G316500 Sobic003G316500 Sobic003G372500--Sobic003G316500 Sobic001G050200 Sobic001G050200 Sobic003G372500--Sobic001G050200 Sobic003G372500--Sobic009G191000 Sobic010G227100 Sobic010G227100 Sobic003G372500--Sobic010G227100 Sobic001G534700 Sobic001G534700 Sobic003G372500--Sobic001G534700 Sobic003G313500 Sobic003G313500 Sobic003G372500--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic003G372500--Sobic001G390800 Sobic001G481900--Sobic002G187700 Sobic001G481900--Sobic004G306500 Sobic001G481900--Sobic003G198800 Sobic001G481900--Sobic003G372500 Sobic001G481900--Sobic010G147100 Sobic003G115900 Sobic003G115900 Sobic001G481900--Sobic003G115900 Sobic008G059100 Sobic008G059100 Sobic001G481900--Sobic008G059100 Sobic001G481900--Sobic001G128300 Sobic007G164000 Sobic007G164000 Sobic001G481900--Sobic007G164000 Sobic009G165700 Sobic009G165700 Sobic001G128300--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic001G128300--Sobic004G091100 Sobic001G043100 Sobic001G043100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic002G187700--Sobic001G481900 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic002G187700--Sobic004G169000 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic008G047800 Sobic008G047800 Sobic003G029700--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic003G029700--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic003G029700--Sobic002G006900 Sobic009G026500 Sobic009G026500 Sobic003G029700--Sobic009G026500 Sobic003G029700--Sobic009G191000 Sobic001G205200 Sobic001G205200 Sobic003G029700--Sobic001G205200 Sobic002G008900 Sobic002G008900 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic003G198800--Sobic001G128300 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic003G198800--Sobic002G411600 Sobic010G141966 Sobic010G141966 Sobic010G141800--Sobic010G141966 Sobic010G141800--Sobic009G161550 Sobic005G182000 Sobic005G182000 Sobic010G141800--Sobic005G182000 Sobic002G034100 Sobic002G034100 Sobic010G141800--Sobic002G034100 Sobic009G139000 Sobic009G139000 Sobic010G141800--Sobic009G139000 Sobic008G122600 Sobic008G122600 Sobic010G141800--Sobic008G122600 Sobic010G141800--Sobic007G020600 Sobic005G090401 Sobic005G090401 Sobic010G141800--Sobic005G090401 Sobic009G092800 Sobic009G092800 Sobic010G141800--Sobic009G092800
Octagon: transcription factors


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