Gene annotation
Transcriptome id Sobic.006G142775.2,Sobic.006G142775.1
Synonym -
Functional annotation -
UniProt A0A1Z5RDX5 , A0A1Z5RE07
Pfam PF02170 PF00035 PF14709 PF04851 PF00271 PF03368 PF00636 PF00035 PF02170 PF04851 PF00271 PF03368 PF00636
Panther DB PTHR14950 PTHR14950:SF15
NCBI CDD KOG0701; dsRNA-specific nuclease Dicer and related ribonucleases
KEGG Orthology K11592; DICER1, endoribonuclease Dicer
Gene Ontology GO:0005515; protein binding GO:0016787hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0016891endoribonuclease activity, producing 5'-phosphomonoesters GO:0006396RNA processing GO:0004525ribonuclease III activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G20320 : dicer-like 4
RAP-DB (Rice) LOC_Os04g43050.1 : Dicer, putative, expressed
MaizeGDB (Corn) Zm00025a056479
Brachypodium KQJ83508 , KQJ83509 , KQJ83511 , KQJ83510 , KQJ83512
Barley HORVU2Hr1G088270.17 , HORVU2Hr1G088270.16 , HORVU2Hr1G088270.14 , HORVU2Hr1G088270.13 , HORVU2Hr1G088270.12 , HORVU2Hr1G088270.11 , HORVU2Hr1G088270.10 , HORVU2Hr1G088270.19 , HORVU2Hr1G088270.18 , HORVU2Hr1G088270.15 , HORVU2Hr1G088270.9 , HORVU2Hr1G088270.8 , HORVU2Hr1G088270.7 , HORVU2Hr1G088270.6 , HORVU2Hr1G088270.5 , HORVU2Hr1G088270.4 , HORVU2Hr1G088270.3 , HORVU2Hr1G088270.2 , HORVU2Hr1G088270.1 , HORVU2Hr1G088270.22 , HORVU2Hr1G088270.20 , HORVU2Hr1G088270.21
Wheat TraesCS2A02G364700 , TraesCS2A02G364700 , TraesCS2B02G383300 , TraesCS2B02G383300 , TraesCS2D02G362700 , TraesCS2D02G362700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G275700 myosin head family protein, expressed K10357: myosin V
2 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
3 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
4 Sobic.007G186900 PP2A regulatory subunit TAP46, putative, expressed -
5 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
6 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.009G161550 - -
8 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
9 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
11 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
12 Sobic.001G205200 expressed protein -
13 Sobic.003G170900 - -
14 Sobic.001G365900 PWWP domain containing protein, expressed -
15 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
16 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
17 Sobic.006G182900 expressed protein -
18 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
19 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
20 Sobic.009G139000 - -


Gene co-expression network
sample Sobic006G142775 Sobic006G142775 Sobic003G275700 Sobic003G275700 Sobic006G142775--Sobic003G275700 Sobic001G389100 Sobic001G389100 Sobic006G142775--Sobic001G389100 Sobic001G191600 Sobic001G191600 Sobic006G142775--Sobic001G191600 Sobic007G186900 Sobic007G186900 Sobic006G142775--Sobic007G186900 Sobic009G165700 Sobic009G165700 Sobic006G142775--Sobic009G165700 Sobic003G029700 Sobic003G029700 Sobic006G142775--Sobic003G029700 Sobic009G161550 Sobic009G161550 Sobic006G142775--Sobic009G161550 Sobic001G128300 Sobic001G128300 Sobic006G142775--Sobic001G128300 Sobic003G221900 Sobic003G221900 Sobic006G142775--Sobic003G221900 Sobic003G198800 Sobic003G198800 Sobic003G275700--Sobic003G198800 Sobic003G275700--Sobic006G142775 Sobic001G534700 Sobic001G534700 Sobic003G275700--Sobic001G534700 Sobic003G275700--Sobic009G165700 Sobic001G043100 Sobic001G043100 Sobic003G275700--Sobic001G043100 Sobic003G275700--Sobic001G389100 Sobic001G451400 Sobic001G451400 Sobic003G275700--Sobic001G451400 Sobic010G206900 Sobic010G206900 Sobic003G275700--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic003G275700--Sobic009G053900 Sobic001G389100--Sobic001G451400 Sobic003G316500 Sobic003G316500 Sobic001G389100--Sobic003G316500 Sobic001G389100--Sobic009G165700 Sobic001G389100--Sobic001G534700 Sobic001G389100--Sobic010G206900 Sobic010G247800 Sobic010G247800 Sobic001G389100--Sobic010G247800 Sobic001G389100--Sobic009G053900 Sobic001G365900 Sobic001G365900 Sobic001G389100--Sobic001G365900 Sobic002G252800 Sobic002G252800 Sobic001G389100--Sobic002G252800 Sobic006G086500 Sobic006G086500 Sobic001G191600--Sobic006G086500 Sobic001G191600--Sobic003G029700 Sobic001G191600--Sobic006G142775 Sobic004G205800 Sobic004G205800 Sobic001G191600--Sobic004G205800 Sobic001G318432 Sobic001G318432 Sobic001G191600--Sobic001G318432 Sobic001G191600--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic001G191600--Sobic002G294800 Sobic010G076300 Sobic010G076300 Sobic001G191600--Sobic010G076300 Sobic002G173000 Sobic002G173000 Sobic001G191600--Sobic002G173000 Sobic010G028800 Sobic010G028800 Sobic007G186900--Sobic010G028800 Sobic007G186900--Sobic006G142775 Sobic010G056000 Sobic010G056000 Sobic007G186900--Sobic010G056000 Sobic003G278500 Sobic003G278500 Sobic007G186900--Sobic003G278500 Sobic010G101800 Sobic010G101800 Sobic007G186900--Sobic010G101800 Sobic007G186900--Sobic001G191600 Sobic007G186900--Sobic001G451400 Sobic007G186900--Sobic003G029700 Sobic001G205200 Sobic001G205200 Sobic007G186900--Sobic001G205200 Sobic003G422500 Sobic003G422500 Sobic009G165700--Sobic003G422500 Sobic009G165700--Sobic010G247800 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic008G047800 Sobic008G047800 Sobic003G029700--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic003G029700--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic003G029700--Sobic002G006900 Sobic009G026500 Sobic009G026500 Sobic003G029700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic003G029700--Sobic009G191000 Sobic003G029700--Sobic001G205200 Sobic009G139000 Sobic009G139000 Sobic009G161550--Sobic009G139000 Sobic004G174200 Sobic004G174200 Sobic009G161550--Sobic004G174200 Sobic010G141800 Sobic010G141800 Sobic009G161550--Sobic010G141800 Sobic005G182000 Sobic005G182000 Sobic009G161550--Sobic005G182000 Sobic004G091100 Sobic004G091100 Sobic009G161550--Sobic004G091100 Sobic004G263600 Sobic004G263600 Sobic009G161550--Sobic004G263600 Sobic002G034100 Sobic002G034100 Sobic009G161550--Sobic002G034100 Sobic009G161550--Sobic001G365900 Sobic009G161550--Sobic006G142775 Sobic001G128300--Sobic009G165700 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic001G128300--Sobic004G091100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic001G122832 Sobic001G122832 Sobic003G221900--Sobic001G122832 Sobic003G221900--Sobic003G316500 Sobic003G340600 Sobic003G340600 Sobic003G221900--Sobic003G340600 Sobic003G221900--Sobic001G389100 Sobic010G021500 Sobic010G021500 Sobic003G221900--Sobic010G021500 Sobic006G133900 Sobic006G133900 Sobic003G221900--Sobic006G133900 Sobic010G147100 Sobic010G147100 Sobic003G221900--Sobic010G147100 Sobic001G332500 Sobic001G332500 Sobic003G221900--Sobic001G332500 Sobic003G221900--Sobic003G029700
Octagon: transcription factors


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