Gene annotation
Transcriptome id Sobic.001G191600.1
Synonym Sb01g016840
Functional annotation TMS membrane protein/tumour differentially expressed protein, putative, expressed
UniProt C5WVB3
Pfam PF03348
Panther DB PTHR10383 PTHR10383:SF24
NCBI CDD KOG2592; Tumor differentially expressed (TDE) protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G06170 : Serinc-domain containing serine and sphingolipid biosynthesis protein
RAP-DB (Rice) LOC_Os03g34300.1 : TMS membrane protein/tumour differentially expressed protein, putative, expressed
MaizeGDB (Corn) Zm00025a006267
Brachypodium KQJ88064 , PNT63397
Barley HORVU2Hr1G085030.2 , HORVU2Hr1G085030.3 , HORVU2Hr1G085030.1 , HORVU2Hr1G085030.6 , HORVU2Hr1G085030.4 , HORVU2Hr1G085030.5
Wheat TraesCS2B02G367900 , TraesCS2B02G367900 , TraesCS2D02G347800 , TraesCS2D02G347800 , TraesCS2A02G349400
Populus -


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cDNA sequences
Sobic.001G191600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G086500 STE_MEKK_ste11_MAP3K.16 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
2 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.006G142775 - K11592: DICER1, endoribonuclease Dicer
4 Sobic.004G205800 cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
5 Sobic.001G318432 - -
6 Sobic.001G365900 PWWP domain containing protein, expressed -
7 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
8 Sobic.010G076300 - -
9 Sobic.002G173000 disease resistance protein RGA2, putative, expressed -
10 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
11 Sobic.010G143800 expressed protein -
12 Sobic.003G411900 auxin response factor 2(PubMedID : 26465154)@auxin response factor 2(PubMedID : 26465154)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@"OsARF4(Ortholog in rice:Hu et al., 2018)"(PubMedID : 31659874)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@auxin response factor, putative, expressed -
13 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.007G186900 PP2A regulatory subunit TAP46, putative, expressed -
15 Sobic.004G181700 calmodulin binding protein, putative, expressed -
16 Sobic.006G228500 coiled-coil domain-containing protein, putative, expressed K13115: coiled-coil domain-containing protein 130
17 Sobic.006G145200 expressed protein -
18 Sobic.007G023200 OsFBX178 - F-box domain containing protein, expressed -
19 Sobic.004G039700 OsFBX188 - F-box domain containing protein, expressed -
20 Sobic.001G222250 - -


Gene co-expression network
sample Sobic001G191600 Sobic001G191600 Sobic006G086500 Sobic006G086500 Sobic001G191600--Sobic006G086500 Sobic003G029700 Sobic003G029700 Sobic001G191600--Sobic003G029700 Sobic006G142775 Sobic006G142775 Sobic001G191600--Sobic006G142775 Sobic004G205800 Sobic004G205800 Sobic001G191600--Sobic004G205800 Sobic001G318432 Sobic001G318432 Sobic001G191600--Sobic001G318432 Sobic001G365900 Sobic001G365900 Sobic001G191600--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic001G191600--Sobic002G294800 Sobic010G076300 Sobic010G076300 Sobic001G191600--Sobic010G076300 Sobic002G173000 Sobic002G173000 Sobic001G191600--Sobic002G173000 Sobic006G086500--Sobic001G191600 Sobic010G013200 Sobic010G013200 Sobic006G086500--Sobic010G013200 Sobic006G086500--Sobic002G294800 Sobic001G268200 Sobic001G268200 Sobic006G086500--Sobic001G268200 Sobic008G172300 Sobic008G172300 Sobic006G086500--Sobic008G172300 Sobic003G221900 Sobic003G221900 Sobic006G086500--Sobic003G221900 Sobic003G340600 Sobic003G340600 Sobic006G086500--Sobic003G340600 Sobic004G181700 Sobic004G181700 Sobic006G086500--Sobic004G181700 Sobic001G389100 Sobic001G389100 Sobic006G086500--Sobic001G389100 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic008G047800 Sobic008G047800 Sobic003G029700--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic003G029700--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic003G029700--Sobic002G006900 Sobic009G026500 Sobic009G026500 Sobic003G029700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic003G029700--Sobic009G191000 Sobic001G205200 Sobic001G205200 Sobic003G029700--Sobic001G205200 Sobic003G275700 Sobic003G275700 Sobic006G142775--Sobic003G275700 Sobic006G142775--Sobic001G389100 Sobic006G142775--Sobic001G191600 Sobic007G186900 Sobic007G186900 Sobic006G142775--Sobic007G186900 Sobic009G165700 Sobic009G165700 Sobic006G142775--Sobic009G165700 Sobic006G142775--Sobic003G029700 Sobic009G161550 Sobic009G161550 Sobic006G142775--Sobic009G161550 Sobic001G128300 Sobic001G128300 Sobic006G142775--Sobic001G128300 Sobic006G142775--Sobic003G221900 Sobic004G205800--Sobic001G214300 Sobic004G205800--Sobic003G029700 Sobic004G205800--Sobic009G026500 Sobic004G205800--Sobic001G191600 Sobic008G192600 Sobic008G192600 Sobic004G205800--Sobic008G192600 Sobic005G144400 Sobic005G144400 Sobic004G205800--Sobic005G144400 Sobic004G205800--Sobic001G365900 Sobic003G148000 Sobic003G148000 Sobic004G205800--Sobic003G148000 Sobic004G205800--Sobic001G318432 Sobic001G318432--Sobic001G214300 Sobic006G048600 Sobic006G048600 Sobic001G318432--Sobic006G048600 Sobic001G318432--Sobic003G029700 Sobic006G228500 Sobic006G228500 Sobic001G318432--Sobic006G228500 Sobic001G318432--Sobic004G341900 Sobic006G048500 Sobic006G048500 Sobic001G318432--Sobic006G048500 Sobic003G429650 Sobic003G429650 Sobic001G318432--Sobic003G429650 Sobic001G318432--Sobic002G006900 Sobic006G182900 Sobic006G182900 Sobic001G318432--Sobic006G182900 Sobic010G206900 Sobic010G206900 Sobic001G365900--Sobic010G206900 Sobic001G534700 Sobic001G534700 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic002G411600 Sobic002G411600 Sobic001G365900--Sobic002G411600 Sobic002G008900 Sobic002G008900 Sobic001G365900--Sobic002G008900 Sobic001G365900--Sobic009G191000 Sobic004G034900 Sobic004G034900 Sobic001G365900--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic001G365900--Sobic001G540400 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic002G294800--Sobic001G389100 Sobic002G294800--Sobic010G013200 Sobic010G076300--Sobic001G191600 Sobic002G134600 Sobic002G134600 Sobic010G076300--Sobic002G134600 Sobic010G223700 Sobic010G223700 Sobic010G076300--Sobic010G223700 Sobic001G226700 Sobic001G226700 Sobic010G076300--Sobic001G226700 Sobic003G109700 Sobic003G109700 Sobic010G076300--Sobic003G109700 Sobic009G103600 Sobic009G103600 Sobic010G076300--Sobic009G103600 Sobic001G222250 Sobic001G222250 Sobic010G076300--Sobic001G222250 Sobic001G298600 Sobic001G298600 Sobic010G076300--Sobic001G298600 Sobic010G076300--Sobic002G294800 Sobic002G173000--Sobic006G182900 Sobic002G173000--Sobic001G214300 Sobic005G032800 Sobic005G032800 Sobic002G173000--Sobic005G032800 Sobic006G021250 Sobic006G021250 Sobic002G173000--Sobic006G021250 Sobic010G248700 Sobic010G248700 Sobic002G173000--Sobic010G248700 Sobic008G027000 Sobic008G027000 Sobic002G173000--Sobic008G027000 Sobic001G287201 Sobic001G287201 Sobic002G173000--Sobic001G287201 Sobic002G173000--Sobic001G318432 Sobic001G474600 Sobic001G474600 Sobic002G173000--Sobic001G474600
Octagon: transcription factors


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