Gene annotation
Transcriptome id Sobic.003G221900.1
Synonym bHLH121, Sb03g028030
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5XR28
Pfam PF00010
Panther DB PTHR23042 PTHR23042:SF59
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19860 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g23823.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028404
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
2 Sobic.003G316500 expressed protein -
3 Sobic.003G340600 VHS and GAT domain containing protein, expressed -
4 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
5 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.006G133900 NIN, putative, expressed -
7 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
8 Sobic.001G332500 WRKY81, expressed -
9 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
10 Sobic.010G223700 MYB transcription factor, putative, expressed -
11 Sobic.001G126100 OsFBO16 - F-box and other domain containing protein, expressed -
12 Sobic.001G365900 PWWP domain containing protein, expressed -
13 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
14 Sobic.010G074300 smr domain containing protein, expressed -
15 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
16 Sobic.006G086500 STE_MEKK_ste11_MAP3K.16 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.003G411900 auxin response factor 2(PubMedID : 26465154)@auxin response factor 2(PubMedID : 26465154)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@"OsARF4(Ortholog in rice:Hu et al., 2018)"(PubMedID : 31659874)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@auxin response factor, putative, expressed -
18 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
19 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
20 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6


Gene co-expression network
sample Sobic003G221900 Sobic003G221900 Sobic001G122832 Sobic001G122832 Sobic003G221900--Sobic001G122832 Sobic003G316500 Sobic003G316500 Sobic003G221900--Sobic003G316500 Sobic003G340600 Sobic003G340600 Sobic003G221900--Sobic003G340600 Sobic001G389100 Sobic001G389100 Sobic003G221900--Sobic001G389100 Sobic010G021500 Sobic010G021500 Sobic003G221900--Sobic010G021500 Sobic006G133900 Sobic006G133900 Sobic003G221900--Sobic006G133900 Sobic010G147100 Sobic010G147100 Sobic003G221900--Sobic010G147100 Sobic001G332500 Sobic001G332500 Sobic003G221900--Sobic001G332500 Sobic003G029700 Sobic003G029700 Sobic003G221900--Sobic003G029700 Sobic001G122832--Sobic003G221900 Sobic001G122832--Sobic001G332500 Sobic005G027400 Sobic005G027400 Sobic001G122832--Sobic005G027400 Sobic001G122832--Sobic003G029700 Sobic003G411900 Sobic003G411900 Sobic001G122832--Sobic003G411900 Sobic001G122832--Sobic003G316500 Sobic010G223700 Sobic010G223700 Sobic001G122832--Sobic010G223700 Sobic002G294800 Sobic002G294800 Sobic001G122832--Sobic002G294800 Sobic002G211800 Sobic002G211800 Sobic001G122832--Sobic002G211800 Sobic001G534700 Sobic001G534700 Sobic003G316500--Sobic001G534700 Sobic009G053900 Sobic009G053900 Sobic003G316500--Sobic009G053900 Sobic009G074400 Sobic009G074400 Sobic003G316500--Sobic009G074400 Sobic003G316500--Sobic001G389100 Sobic003G316500--Sobic010G147100 Sobic001G365900 Sobic001G365900 Sobic003G316500--Sobic001G365900 Sobic009G165700 Sobic009G165700 Sobic003G316500--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic003G316500--Sobic001G451400 Sobic010G206900 Sobic010G206900 Sobic003G316500--Sobic010G206900 Sobic008G172300 Sobic008G172300 Sobic003G340600--Sobic008G172300 Sobic003G340600--Sobic003G221900 Sobic002G167500 Sobic002G167500 Sobic003G340600--Sobic002G167500 Sobic010G092300 Sobic010G092300 Sobic003G340600--Sobic010G092300 Sobic003G398700 Sobic003G398700 Sobic003G340600--Sobic003G398700 Sobic009G162600 Sobic009G162600 Sobic003G340600--Sobic009G162600 Sobic004G181600 Sobic004G181600 Sobic003G340600--Sobic004G181600 Sobic010G013200 Sobic010G013200 Sobic003G340600--Sobic010G013200 Sobic006G086500 Sobic006G086500 Sobic003G340600--Sobic006G086500 Sobic001G389100--Sobic001G451400 Sobic001G389100--Sobic003G316500 Sobic001G389100--Sobic009G165700 Sobic001G389100--Sobic001G534700 Sobic001G389100--Sobic010G206900 Sobic010G247800 Sobic010G247800 Sobic001G389100--Sobic010G247800 Sobic001G389100--Sobic009G053900 Sobic001G389100--Sobic001G365900 Sobic002G252800 Sobic002G252800 Sobic001G389100--Sobic002G252800 Sobic010G021500--Sobic003G398700 Sobic010G167900 Sobic010G167900 Sobic010G021500--Sobic010G167900 Sobic008G113100 Sobic008G113100 Sobic010G021500--Sobic008G113100 Sobic006G096900 Sobic006G096900 Sobic010G021500--Sobic006G096900 Sobic001G456900 Sobic001G456900 Sobic010G021500--Sobic001G456900 Sobic010G149200 Sobic010G149200 Sobic010G021500--Sobic010G149200 Sobic010G021500--Sobic005G027400 Sobic005G100700 Sobic005G100700 Sobic010G021500--Sobic005G100700 Sobic010G021500--Sobic003G221900 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic003G155100 Sobic003G155100 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic001G268200 Sobic001G268200 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic001G080700 Sobic001G080700 Sobic001G332500--Sobic001G080700 Sobic001G332500--Sobic001G122832 Sobic003G253600 Sobic003G253600 Sobic001G332500--Sobic003G253600 Sobic001G375700 Sobic001G375700 Sobic001G332500--Sobic001G375700 Sobic001G392300 Sobic001G392300 Sobic001G332500--Sobic001G392300 Sobic001G332500--Sobic003G221900 Sobic007G136800 Sobic007G136800 Sobic001G332500--Sobic007G136800 Sobic001G332500--Sobic003G398700 Sobic006G185100 Sobic006G185100 Sobic001G332500--Sobic006G185100 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic008G047800 Sobic008G047800 Sobic003G029700--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic003G029700--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic003G029700--Sobic002G006900 Sobic009G026500 Sobic009G026500 Sobic003G029700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic003G029700--Sobic009G191000 Sobic001G205200 Sobic001G205200 Sobic003G029700--Sobic001G205200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.